Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03277 ATGAGTAGCAACACAGCAGTTAATTCCCCTGGATTCCTTGGCTCAAGCGACATCAGTGGCTATAGCTATGGCATAGGAATTTCCATTGGAATTCTCTTGCTCATTATAACTATTACTTTAACTTCCTACTTCTGCACCAGAACACATGTGTCATTTGCTCCAGCTACTAGGAATAGGAGACGCACCCCTAGTGTCCTTGAACCACAACACAGTGAGCACACTATAGTTGATGTAAGTCTTGATGAAGCGACAATTCTGAGTTATCCAACTTTGTTGTACTCTGAAGCCAAGCTCAAGAAGTCTGATTCCACTGCAACATGTTGTTCTATATGTCTGGCTGATTACAAGGGTACTGATATGCTTCGGATGCTACCTGATTGTGGACACCAATTCCACCTCAAGTGCATAGATCCATGGTTGAGGTTGCATCCTACTTGTCCAGTTTGCAGAACTTCTCCAATCCCAACACCACTCTCAACTCCTCTGGCTGAAGTGGTTCCTTTAGCAAGCAGACAGGATTCATAG 525 0.44 MSSNTAVNSPGFLGSSDISGYSYGIGISIGILLLIITITLTSYFCTRTHVSFAPATRNRRRTPSVLEPQHSEHTIVDVSLDEATILSYPTLLYSEAKLKKSDSTATCCSICLADYKGTDMLRMLPDCGHQFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLASRQDS 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03277 174 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 12 164 IPR045899 -
Pumo5g03277 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 154 IPR013083 -
Pumo5g03277 174 SMART ring_2 108 149 IPR001841 -
Pumo5g03277 174 Pfam Ring finger domain 108 150 IPR001841 -
Pumo5g03277 174 SUPERFAMILY RING/U-box 90 155 - -
Pumo5g03277 174 FunFam E3 ubiquitin-protein ligase ATL6 69 155 - -
Pumo5g03277 174 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03277 Pumo-Chr5 81947350 81948220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03277 11 170 C3H Transcription Factor Family AT2G35910 63.750 5.01e-59 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03277 - - gmx:100811799 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03277 5 81947350 81948220 Pumo3g02990 3 53430971 53431616 PCT