Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03276 ATGGCGATGCAAACTGTTTATCTTAAAGAACATGAAGGAAATGCACACAATTTTGTGGGGGCGTTGTCATCTGCCTCTTCAGCACCCTGGTGGAGTGCTTTTGGATCTCAATCCGTTCATGGGGGGGAGTCTTGTGGCCAAATGAAACCCTTTTCATTGGAACTGCCTAACTGCATAGACCAACTTGCTGCCAGTAAGCCATCGGCAAGAGGAGCTGAACAAGTGTTCGGCAAAGGACATACAACTCAGTTTACCATCTTTCCAGATGATTGCAAAATGTCAGATGATGCGCAAAAGCTTCAGACAACCATATCACTGCAGTCATCACTCACTGATTCCCACTCCCGATTTGAGATAGGATTTAGTCAGCCCATGATATGTGCAAAATATCCTTATACTGATCAATTTTACGGGCTCTTCTCAGCTTATGCACCTCAAATTTCGGGACGTATAATGCTGCCACTTAACATGACATCTGATGATGGACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATTAGACGTCGGCAGTCCCGTGCCAAAGCTGTACTTGATCACAAATTGACTAAACGTCGCAAGCCCTATATGCACGAATCACGCCATCTCCATGCAATGCGGCGACCAAGAGGATGTGGGGGTCGCTTCTTGAACTCTAAGAATTCTGTTAACGGAAATGGTAAAATTGGAAATGAAGTGCATAAAACTGTTGGTGAACAATTGCAGTCTAGTGGCTCTCAGAGTTCTGAATTCCTTCAATCTGAGGTGGGAACTTTGAACTCATCAAAAGAGACTAATGGCAGCAGTCCAAATATTTCTGGTTCAGAGGTGACTAGCATGTATTCGCGGGGAGGTCTCGACAGCTTTTCTCTGAATCATCTTGGATCTGCTGTCCACTCTCTTGCAGACATGATAGATAGTGGGCGCGGTATGATCATACCCCCCAAATGGGTTGCAGCAGCTGGTAACTGCTGCAACCTTAAAGTTTGA 993 0.4502 MAMQTVYLKEHEGNAHNFVGALSSASSAPWWSAFGSQSVHGGESCGQMKPFSLELPNCIDQLAASKPSARGAEQVFGKGHTTQFTIFPDDCKMSDDAQKLQTTISLQSSLTDSHSRFEIGFSQPMICAKYPYTDQFYGLFSAYAPQISGRIMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLDHKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNSKNSVNGNGKIGNEVHKTVGEQLQSSGSQSSEFLQSEVGTLNSSKETNGSSPNISGSEVTSMYSRGGLDSFSLNHLGSAVHSLADMIDSGRGMIIPPKWVAAAGNCCNLKV 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03276 330 ProSiteProfiles NF-YA/HAP2 family profile. 160 220 IPR001289 GO:0003700|GO:0006355
Pumo5g03276 330 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 67 283 IPR001289 GO:0003700|GO:0006355
Pumo5g03276 330 SMART cbf3 159 220 IPR001289 GO:0003700|GO:0006355
Pumo5g03276 330 PRINTS CCAAT-binding transcription factor subunit B signature 163 185 IPR001289 GO:0003700|GO:0006355
Pumo5g03276 330 PRINTS CCAAT-binding transcription factor subunit B signature 194 217 IPR001289 GO:0003700|GO:0006355
Pumo5g03276 330 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 163 217 IPR001289 GO:0003700|GO:0006355
Pumo5g03276 330 MobiDBLite consensus disorder prediction 241 277 - -
Pumo5g03276 330 Gene3D - 161 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03276 Pumo-Chr5 81917882 81922765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03276 1 330 CCAAT-HAP2 Transcription Factor Family AT3G05690 43.064 3.27e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pumo5g03276 CBFB_NFYA 9.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03276 K08064 - gmx:100527677 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03276 5 81917882 81922765 Pumo3g02992 3 53454214 53459742 PCT