Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03275 ATGGCTGCTACTACGGCTTCTGTTTCCTCTTGTATCTGCAATAGAATATACAACCTTTCCTTCACACACCCTTCCCTTTCACTCACCGGCAACTTCCCTCAAAGACCCATATCCCAAAAACCACTCAGTCTCAGCCTCAAGTCCCAAAGTTTCACTCTTTCCTTTCTCCCACTTCACCGTCTTCCCCCACCTCCCGCCGCCTTCGATGGGTTGGAAGTGGCTCAAGACACCACAGAGTCCCAACAAGACGAACCAGAAACAGAAACAGAAACTGTTGAAAAAACAGAACAAGAGGAAGAGCAAAAGGTCTCAGACTCAAACGATGCTGGGAGGCTCTATGTTGGAAACTTGCCATATTCAATCACTAATTCCGAATTGGCTGAGCTCTTTGGAGAAGCTGGCACCGTGGCGTCTGTTGAGATTGTGTATGATCGTGTCACGGACAGAAGCAGAGGATTTGCATTCGTTACAATGGGGAGTGTTGAGGATGCTAAAGAGGCAATTCGAATGTTTGATGGCTCTCAAGTTGGTGGTAGGACTGTTAAGGTAAACTTCCCAGAGGTACCCAAAGGAGGGGAAAGGTTAGTAATGGGGCCAAAAATACGAAACAACTACAGAGGCTTTGTAGACAGCCCTCACAAGATCTATGCTGGAAACCTTGGCTGGGGACTGACCTCACAGGGTCTTAGAGAAGCCTTTGCTGAGCAGCCAGGCGTATTGAGTGCCAAGGTCATCTATGAGAGGGACAGTGGAAGATCTCGGGGTTTCGGGTTTGTTTCTTTTGAAACTGCTGAGTCTGCACAAGCTGCTTTGGACATTATGAATGGTGTGGAGGTACAAGGTAGGTCCTTGCGGTTGAATTTGGCTGAAGCGAGGTCACCTTCATCTCCTCCACTAATTGAGAAAAATTTAGGAAGCAATGTTGAAAGCTCGGAATTGGTGTCTAGTGCCAGCACATAA 960 0.475 MAATTASVSSCICNRIYNLSFTHPSLSLTGNFPQRPISQKPLSLSLKSQSFTLSFLPLHRLPPPPAAFDGLEVAQDTTESQQDEPETETETVEKTEQEEEQKVSDSNDAGRLYVGNLPYSITNSELAELFGEAGTVASVEIVYDRVTDRSRGFAFVTMGSVEDAKEAIRMFDGSQVGGRTVKVNFPEVPKGGERLVMGPKIRNNYRGFVDSPHKIYAGNLGWGLTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESAQAALDIMNGVEVQGRSLRLNLAEARSPSSPPLIEKNLGSNVESSELVSSAST 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03275 319 MobiDBLite consensus disorder prediction 79 94 - -
Pumo5g03275 319 CDD RRM1_PSRP2_like 111 190 - -
Pumo5g03275 319 SUPERFAMILY RNA-binding domain, RBD 210 296 IPR035979 GO:0003676
Pumo5g03275 319 Gene3D - 70 193 IPR012677 -
Pumo5g03275 319 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723
Pumo5g03275 319 SMART rrm1_1 214 287 IPR000504 GO:0003723
Pumo5g03275 319 SMART rrm1_1 111 184 IPR000504 GO:0003723
Pumo5g03275 319 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 182 IPR000504 GO:0003723
Pumo5g03275 319 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 285 IPR000504 GO:0003723
Pumo5g03275 319 MobiDBLite consensus disorder prediction 299 319 - -
Pumo5g03275 319 MobiDBLite consensus disorder prediction 66 109 - -
Pumo5g03275 319 MobiDBLite consensus disorder prediction 294 319 - -
Pumo5g03275 319 SUPERFAMILY RNA-binding domain, RBD 107 187 IPR035979 GO:0003676
Pumo5g03275 319 PANTHER OS02G0815200 PROTEIN 39 294 - -
Pumo5g03275 319 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Pumo5g03275 319 FunFam 33 kDa ribonucleoprotein, chloroplastic 195 299 - -
Pumo5g03275 319 SMART rrm2_1 111 184 IPR003954 GO:0003676
Pumo5g03275 319 Gene3D - 198 297 IPR012677 -
Pumo5g03275 319 CDD RRM2_NsCP33_like 214 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03275 Pumo-Chr5 81914825 81917191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03275 97 292 Eukaryotic Initiation Factors Gene Family AT3G16380 32.500 4.56e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03275 - - gmx:100814852 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03275 5 81914825 81917191 Pumo3g03559 3 74487719 74489248 PCT