Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03273 ATGAACGACTTGTTGTCGGTCTTGTTCTCGAAGGGAAAGCAACAACAGGAGCATCACGTGATCGAGATAACACAAGGTGGTGCTGTGGATTTGGACAAGTTCTTCCAAGAAGTGGAATCGGTGAAGGAGGACTTGAAGGAGCTAGAGCGGCTCCACCTAAGCCTGCGTGCCACAAACCAAAACGGCAAAGCGCTTCACAGCCCGAAGGGCGTTAGGGAGGTTCGGTCTCGCATGGACCTGGACGTGGCTCTGGCCCTCACCAAAGCCAAGCTCGTGAAGGGTCGCTTGGAGGCTCTCCACCGCGCCAACCAAGCCACCCTCTCCTTGCCCGATTGCGGACCCGGTTCATACTCCGACCGGACCCGAACCGCGCTTGTGGGTGCCTTGACCAAGAACCTCAGGCAGTCGATGGAGAGTTTCAATAAGCTGAGGGAGCAGATATCGTACGAGTACAGAGACACCGTGCAACGTAGATACTACGCTGTCACCGGAGAGAACCCTGATCAAGAAACCATTGACCTCCTCATCTCTACGGGTGAGAGTGAAACATTCTTACAGAAAGCCATCCAACAGCAAGGGAGAGCCACGATCATGGACACCATCCAAGAGATTCAGGAGAGGCACGGCACGGTGAAAGAAATAGAGAGAAATCTTCACGAGCTGCACCAAGTGTTCTTGGACATGGCAGTGCTGATCCAACACCAGGGTGAACACTTGGATGACATAGAGAGCCACGTGGCACTCGCAAATTCCTTTGTGAGCAAAGGGGTGCAGCATTTGCAGGTTGTGAGGGATCATCAGAAGAACACCCGTAACTGCACTTGTTTCGCCATACTCCTCTTCATTATCGTCTTGGTCATAGTTCTCCCTATTGTTTTCAAAAATTGA 888 0.5225 MNDLLSVLFSKGKQQQEHHVIEITQGGAVDLDKFFQEVESVKEDLKELERLHLSLRATNQNGKALHSPKGVREVRSRMDLDVALALTKAKLVKGRLEALHRANQATLSLPDCGPGSYSDRTRTALVGALTKNLRQSMESFNKLREQISYEYRDTVQRRYYAVTGENPDQETIDLLISTGESETFLQKAIQQQGRATIMDTIQEIQERHGTVKEIERNLHELHQVFLDMAVLIQHQGEHLDDIESHVALANSFVSKGVQHLQVVRDHQKNTRNCTCFAILLFIIVLVIVLPIVFKN 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03273 295 CDD SynN 31 188 IPR006011 GO:0016020
Pumo5g03273 295 Pfam Syntaxin 33 236 IPR006011 GO:0016020
Pumo5g03273 295 Gene3D - 31 158 - -
Pumo5g03273 295 FunFam Syntaxin 132 194 293 - -
Pumo5g03273 295 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Pumo5g03273 295 Coils Coil 31 58 - -
Pumo5g03273 295 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 28 158 - -
Pumo5g03273 295 Gene3D - 190 294 - -
Pumo5g03273 295 Pfam SNARE domain 239 289 IPR000727 -
Pumo5g03273 295 SUPERFAMILY t-snare proteins 30 256 IPR010989 GO:0016020|GO:0016192
Pumo5g03273 295 CDD SNARE_syntaxin1-like 200 261 - -
Pumo5g03273 295 ProSitePatterns Syntaxin / epimorphin family signature. 207 246 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pumo5g03273 295 SMART tSNARE_6 196 263 IPR000727 -
Pumo5g03273 295 PANTHER SYNTAXIN 29 284 IPR045242 -
Pumo5g03273 295 SMART SynN_4 26 152 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03273 Pumo-Chr5 81903037 81905363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03273 27 275 SNARE and Associated Proteins AT3G11820 64.257 2.71e-116 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03273 K08486 - gmx:100790221 517.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03273 5 81903037 81905363 Pumo3g03002 3 54337941 54339948 PCT