Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03269 ATGGACAACGAGATCGATGTTCCTTCGTTCTTTCTCTGTCCCATTTCGTTAGAAATCATGAAGGACCCAGTGACGGTCTCAACGGGGATCACCTACGACCGTGAAAGCATCGAAACGTGGCTGTTCTCGAAGAAAAACACGACATGCCCCATCACCAAACAACCCTTGTTGGATTACACCGATCTCACACCAAACCACACCCTTCGGAGACTCATCCAAGCGTGGTGTACCATGAACGCTTCTCACGGCGTCGAAAGGATCCCAACCCCAAAACCCTCCGTTAACAAGAACCAAATTTCGAAGCTTCTCAAAGACGCTTCTCATTCCCCTCTCATATGCCTCCGAAGACTCAAATCCATCGCTTCAGGAAGCGAAACAAATAAGCGATGCATGGAAGCTTCCGGTGCCGTTGAGTTCCTAGCATCAATTGTAATCAACAACAACAACAACAATATCGATTCTTCGAATGAGGCTGACCCAAATGATGCTTCTGGATTCGAGTTGAAAACAAGTGCAAGAGATGAAGCGTTGAGCTTGCTTCATAATCTTCATTTATCTGAACAAGGGTTGAAGACTCTCTTGGGCTTCAGAAACGGCGAGTTTATTGAGTCTTTAACAAGAGTCATGCAGAAGGGGTTCTTTGAATCACGCGCTTATGCAGTGTTCTTGTTGAAATCTATGTCCGAAGTGGCTGAACCGGTGCAACTATTGCATCTAAAACAAGACCTCTTCGTGGAGCTAGTACAAGTCTTGAAGGATCAGATTTCACAGAAGACATCAAAAGCGACCCTTCAAACCCTGATCCAATTCTCTCCATGGGGGAGGAACAGGATCAAAGCCGTGGAAGCAGGAACCGTTCCTGTTTTGGTAGAACTTCTTCTCGATTGCAAGGAGAGAAAGCCTTGCGAGATGATGCTGGTGTTGTTGGAAATGCTATGCCAGTGTGCTGAGGGAAGGGCAGAACTTTTGAGCCATGGAGCGGGTCTTGCCATTGTGTCCAAAAAGATTCTAAGGGTTTCAACGTTGGCGAATGATAGGGCTGTTAAGATTCTTCTGGCTGTTTCGAGGTTCTCTGCGACTCCACACGTTGCTCAAGAAATGCTGAAACTCGGTGTGGTCGCAAAACTGTGCTTGGTGCTTCAGGTGGATAGCGGGAACAAGGCTAAGGAAAAAGCAAGAGAGATACTCAAATTGCATGCTCGGGCGTGGAGGAATTCTCCATGCATACCAAGCAATTTGCTTTCTTCATACCCGGTTTATGTGTGA 1266 0.4668 MDNEIDVPSFFLCPISLEIMKDPVTVSTGITYDRESIETWLFSKKNTTCPITKQPLLDYTDLTPNHTLRRLIQAWCTMNASHGVERIPTPKPSVNKNQISKLLKDASHSPLICLRRLKSIASGSETNKRCMEASGAVEFLASIVINNNNNNIDSSNEADPNDASGFELKTSARDEALSLLHNLHLSEQGLKTLLGFRNGEFIESLTRVMQKGFFESRAYAVFLLKSMSEVAEPVQLLHLKQDLFVELVQVLKDQISQKTSKATLQTLIQFSPWGRNRIKAVEAGTVPVLVELLLDCKERKPCEMMLVLLEMLCQCAEGRAELLSHGAGLAIVSKKILRVSTLANDRAVKILLAVSRFSATPHVAQEMLKLGVVAKLCLVLQVDSGNKAKEKAREILKLHARAWRNSPCIPSNLLSSYPVYV 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03269 421 Gene3D - 99 407 IPR011989 -
Pumo5g03269 421 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Pumo5g03269 421 CDD RING-Ubox_PUB 8 58 IPR045210 -
Pumo5g03269 421 FunFam RING-type E3 ubiquitin transferase 1 85 - -
Pumo5g03269 421 PANTHER WDSAM1 PROTEIN 4 410 IPR045185 GO:0061630
Pumo5g03269 421 SUPERFAMILY ARM repeat 113 396 IPR016024 -
Pumo5g03269 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Pumo5g03269 421 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Pumo5g03269 421 SUPERFAMILY RING/U-box 4 82 - -
Pumo5g03269 421 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03269 Pumo-Chr5 81860358 81861751 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03269 1 418 U-box Gene Family AT3G52450 56.948 1.09e-175 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03269 - - gmx:100811258 756.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03269 5 81860358 81861751 Pumo5g03269 5 81860358 81861751 ECH
Pumo5g03269 5 81860358 81861751 Pumo3g03012 3 54519017 54520600 PCT
Pumo3g03010 3 54479895 54481981 Pumo5g03269 5 81860358 81861751 PCT