Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03268 ATGGATGAAATTGAAGTTCCTCAGTATTTCATCTGCCCTATTTCCCTTCAAATCATGAAAGACCCAGTGACCACTATAACAGGCATCACATACGACCGAGACAGCATTGAGAAATGGTTGTTCACCGAAAAAAACTCCACATGCCCAATTACAAGACACCCTCTCCCTAAAGACTCTGACCTAACCCCAAATCACACCCTTCTCCGCCTAATCCAAGCTTGGTGCACCCAAATTGATATTCACAGGATTCCCACACCTAAGCCACCACTTAACAAGTTTCAAGTCCTGAAACTCCTCAAAGACCTCAAGGACCCCAACTTGCAACTCAAAACGATCAAGGAGTTGAAATTGCTAGCATCTCAGAACAAGAAAAATGACAAGTGCTTATTACTAGAGGCTGGTGCCCCAAAGGCCATGATCCTATTCATGTTGACTTGTTGTAGAAAAGGTCAATTTGATGAGGCTCTAGAAGAAGCCCTTAGTTTATTGCAGCTTGTTGATGTGCCAGAAGAGGAAATAAAGCTTCTTCTAGCGGAAAAAAACGATCAAATATTGGATTCCCTAACGTGGGTCTTGGGCTGTGAGGTGGAGAATTCAATTACTGTGAAGTCCCATGCATTGATGTTACTCAACACAATCATGCAAAAAGCTAGCGCCAACGTAATGGAGAGACTTAAACCTGAAATGTTTGAATCGATTCTGAAGGTTTTACGATGTGGGACTACCCAACAAGGCATGAAAGCCGCTTTTCATGCCATGTTAAGCGCTTGCCACTGGGGGAGAAACAGGATCATGATGGTGGAAAGAGGTGCAGTTTTTGAACTCATAGAGATCGAATTCGCGACACCCGAAAAGAGAACCACGGAACTCACCATGGAGATACTGTTTCATCTGTGTTCTTGTGCTGACGGAAGAGCTCAGTTTCTGGGTCACAAAGGTGCCATTGCTCTGTTGACTGAGCGAATCTTCACGGTTTCGCATGCGGTGGATGACAGAGCCGTGGGTATTCTTTCATTGGTGTTGTCTTCGTTCTCTGCCACACGTGCGGTGCTTCAGGAGATGGTGGAGTTTGGAACTGTGTCGAAGATTTGTAGGTTGGTTCAGAGTGATCATCATGGCACGTATCTGAAAGACAAAGCAAGGGAAATGCTGAAGTCTCATGCTGACGTTTGGGAACATTCTCCTTGCATTTCTAATCCATTTGTGCGACGTTAA 1215 0.4469 MDEIEVPQYFICPISLQIMKDPVTTITGITYDRDSIEKWLFTEKNSTCPITRHPLPKDSDLTPNHTLLRLIQAWCTQIDIHRIPTPKPPLNKFQVLKLLKDLKDPNLQLKTIKELKLLASQNKKNDKCLLLEAGAPKAMILFMLTCCRKGQFDEALEEALSLLQLVDVPEEEIKLLLAEKNDQILDSLTWVLGCEVENSITVKSHALMLLNTIMQKASANVMERLKPEMFESILKVLRCGTTQQGMKAAFHAMLSACHWGRNRIMMVERGAVFELIEIEFATPEKRTTELTMEILFHLCSCADGRAQFLGHKGAIALLTERIFTVSHAVDDRAVGILSLVLSSFSATRAVLQEMVEFGTVSKICRLVQSDHHGTYLKDKAREMLKSHADVWEHSPCISNPFVRR 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03268 404 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Pumo5g03268 404 SUPERFAMILY RING/U-box 3 84 - -
Pumo5g03268 404 SUPERFAMILY ARM repeat 97 373 IPR016024 -
Pumo5g03268 404 PANTHER WDSAM1 PROTEIN 3 398 IPR045185 GO:0061630
Pumo5g03268 404 CDD RING-Ubox_PUB 7 55 IPR045210 -
Pumo5g03268 404 Gene3D - 94 391 IPR011989 -
Pumo5g03268 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Pumo5g03268 404 Pfam U-box domain 6 77 IPR003613 GO:0004842|GO:0016567
Pumo5g03268 404 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03268 Pumo-Chr5 81845788 81847002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03268 2 397 U-box Gene Family AT3G11840 41.761 4.30e-107 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03268 - - lja:Lj0g3v0014579.1 481.1