Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03266 ATGAAGAAAGCCAAACTAATTGGTATGCTTGATGAGGTGGAGCAAAGGTACAGGCAGTACCACCAGCAGATGGAGATTGTGGTTTCATCATTTGAGCAAGCTGCGGGGATTGGTTCTGCGAGGACTTACACTGCCCTTGCATTGCAAACAATCTCGAAGCAGTTTCGGTGTTTGAAAGATGCGATTGCAGGGCAGGTTCGAGCTTCTAATAAGAGCTTAGGAGAAGAGGATTGCTCTGGAGGGAAAATAGAAGATAAGCTCAATTCATTTTTTTTTCTTATTTTATTGTTTTGCAATTATCCTAAGGATTCGGACAAGCACATGCTTGCAAAACAAACAGGGCTAACTAGGAGCCAGGTTTCAAATTGGTTTATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTACTTGGAGGAGATGAAGGATCATGAACCGAATGGATCTGAGGATAAATCAAGCAAGAGCAATGAAGATTCTACTACAAAAATGGCAGCCTCACAAGAGAAAGGTCCTTCCAACGAAACCGAAGCCAAGAGTTTCAATTCCAAACAAGAGGTTTCTAAGAGCCAGAACACTGCCATGGTTTCAGTTGCTAGACCATCAACATCACCACTTGGTGTGAATGTGAGAAACCAATCAGGATTCAGCTTCATTGGGTCATCAGAGCTAGAAGGGATCACACAGGGAAGTCCCAAGAAACCAAGGAACCATGAGATGATGCATTCCCCAAATAGTGTCCCTTCAATGAACATGGATGTGAAGCCCAATGAGGCAGACAATGAGCAGCTCTCAATGAAATTTGGGGATGAAAGGCAAGGCAGAAATGGGTCCTCTTTCATGGGAAATCAAACAAACTTTATTGGTGGTTTTGGACAGTACCCAATTGGGGATATTGGAAGGTTTGATGCAGAGCAATTTACACCAAGGTTTTCAGGTAATGGTGTTTCCCTCACTCTTGGTCTTGACTCATTACCAGGAACTCATCAAACATTTCTACCAAACCAAAACATTCAACTGGGAAGAAGCTTGGACATTGGTGAACCAAATGAGTTTGGTGCCATAAATACTTCCTCTCCTCACTCTACAGCTGCTTATGAGAGTATCAGCATGCAAAACCCAAAGAGGTTTGCTGCACAATTGTTGCCAGACTTTGTGACCTAA 1173 0.4314 MKKAKLIGMLDEVEQRYRQYHQQMEIVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIAGQVRASNKSLGEEDCSGGKIEDKLNSFFFLILLFCNYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKDHEPNGSEDKSSKSNEDSTTKMAASQEKGPSNETEAKSFNSKQEVSKSQNTAMVSVARPSTSPLGVNVRNQSGFSFIGSSELEGITQGSPKKPRNHEMMHSPNSVPSMNMDVKPNEADNEQLSMKFGDERQGRNGSSFMGNQTNFIGGFGQYPIGDIGRFDAEQFTPRFSGNGVSLTLGLDSLPGTHQTFLPNQNIQLGRSLDIGEPNEFGAINTSSPHSTAAYESISMQNPKRFAAQLLPDFVT 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03266 390 MobiDBLite consensus disorder prediction 162 198 - -
Pumo5g03266 390 Pfam Associated with HOX 1 63 IPR006563 -
Pumo5g03266 390 SMART HOX_1 77 138 IPR001356 GO:0003677
Pumo5g03266 390 ProSiteProfiles 'Homeobox' domain profile. 87 134 IPR001356 GO:0003677
Pumo5g03266 390 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 100 162 - -
Pumo5g03266 390 Coils Coil 3 23 - -
Pumo5g03266 390 CDD homeodomain 85 135 IPR001356 GO:0003677
Pumo5g03266 390 Pfam Homeobox KN domain 100 130 IPR008422 GO:0003677|GO:0006355
Pumo5g03266 390 Gene3D - 82 156 - -
Pumo5g03266 390 MobiDBLite consensus disorder prediction 227 255 - -
Pumo5g03266 390 SUPERFAMILY Homeodomain-like 96 141 IPR009057 -
Pumo5g03266 390 MobiDBLite consensus disorder prediction 144 198 - -
Pumo5g03266 390 SMART prehox3 1 64 IPR006563 -
Pumo5g03266 390 MobiDBLite consensus disorder prediction 144 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03266 Pumo-Chr5 81816842 81818875 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03266 1 390 Homeobox Transcription Factor Family AT2G35940 46.552 2.40e-87 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pumo5g03266 POX 5.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03266 - - gmx:100810901 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03266 5 81816842 81818875 Pumo5g03266 5 81816842 81818875 ECH
Pumo5g03266 5 81816842 81818875 Pumo3g03014 3 54570253 54575767 PCT