Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03243 ATGGGCAAGAAAATGAAGCTCCCTTCCCTCCTCAACACCAACAAGTCCTCTTCCTCTTCTTCTTCTTGGCCCTGGCCCTCGTGCCACCAACCGCGAACGCTCTCTTTCCGAACCCAAAACGACGCCGCATTCAAAACCATCAACGCCGCATACTTGGACACGTTGGAGAGCTCCGAGTCCTTCTTCACCGTCTCTCCCGAATCCGGAAGCTTCTCAACCGCCTCAGAAGAAGATTCCAGAAGAGGGGACTCACTGGAAACCGTGATTCGCGGCTTGCGTTCCGACCGTTTGTTCTTCGAGCCAGACGAGACAAGCTCCATATTAGAGGCCAAAACGACAGAAACAGAAACAGAAACAGCGTTGCCGTTCAAAGACAGCCTTGTGATGTCCGTGGACTCTCAAGACCCTTACGTGGATTTTCGCAGGTCCATGGAGGAGATGGTGGAGGCGCAGTGCGTTAAGGACTGGGAGGGTCTCCAAGCGCTCTTGTGTTGGTACTTGAAAGTCAATGGAAAAAGCAACCATGGCTATATCCTTGGTGCTTTCGTTGATTTATTGGTCGCTTTATCGTTTTATAGCTCTTCCTCTTGCAGCACTCGCTGTGTTTCTTGTTTGGAAGCTGAGGTCGAGGTTGATAATATAGCTGCTACTACCACTTCTTCTTTCTTGTTACAACAAGTTAGGGAAGACCAGCCTTCATCATCTTCTTCTTCCTCTTTGAATTAA 726 0.4945 MGKKMKLPSLLNTNKSSSSSSSWPWPSCHQPRTLSFRTQNDAAFKTINAAYLDTLESSESFFTVSPESGSFSTASEEDSRRGDSLETVIRGLRSDRLFFEPDETSSILEAKTTETETETALPFKDSLVMSVDSQDPYVDFRRSMEEMVEAQCVKDWEGLQALLCWYLKVNGKSNHGYILGAFVDLLVALSFYSSSSCSTRCVSCLEAEVEVDNIAATTTSSFLLQQVREDQPSSSSSSSLN 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03243 241 MobiDBLite consensus disorder prediction 1 26 - -
Pumo5g03243 241 MobiDBLite consensus disorder prediction 9 26 - -
Pumo5g03243 241 Pfam Transcriptional repressor, ovate 133 189 IPR006458 -
Pumo5g03243 241 NCBIfam uncharacterized plant-specific domain TIGR01568 128 190 IPR006458 -
Pumo5g03243 241 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 45 189 IPR038933 GO:0045892
Pumo5g03243 241 ProSiteProfiles OVATE domain profile. 128 188 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03243 Pumo-Chr5 81446623 81447348 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Pumo5g03243 Ovate 2.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03243 - - gmx:100784899 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03243 5 81446623 81447348 Pumo3g00248 3 3159800 3160801 ECH
Pumo5g03243 5 81446623 81447348 Pumo5g03243 5 81446623 81447348 ECH