Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03225 ATGTCGATAAACCACTACTCACCGGAAACAACACTATACTGGACCAGCGAACAGCAACAACAAGAAGCCGCCACGTGGCTGAGTAATTCCCACACTCCGCGTTTCAACCTCAACGACGAGGAGGAGGACGAAGACGACGTCGTCGTTTCGGACAACGCTCAAGGCAGCGCTAACTTAACGCAACAAGAGGAGAAGGAAGCGATGTTCGAGAAGCCGTTGACGCCGAGCGACGTGGGGAAGCTGAACCGGCTCGTGATCCCCAAACAGCACGCGGAGAAGCACTTCCCGCTCGACTCGTCCGGAGGAGACTCGGCGAAGGGCCTCTTGCTGAGTTTCGAGGACGAGTCCGGCAAGTGCTGGCGCTTCCGTTACTCTTATTGGAACAGTAGCCAGAGTTACGTTTTGACCAAAGGTTGGAGCCGTTACGTCAAAGACAAACGCCTCCACGCTGGCGACGTCGTTTTGTTCCACAGACACCGCACCCATCCTCAACGCTTCTTCATCACCTGCACCCGCCGCCAACCCCACACTACTCCCCCCGCGCAAGTTAGCACCACCGCCAGATCCTCCTTCTACTCTGCGCACCCTTATCCTACGCATCACCTCCCCTTCCCATACCAACAACCTCACTCTCTTCATGCACCAGGTGGAGGGTCCCAAGGACAGAACGAAACGACACCGGGGGGGAACAGTTCAAGTGGCAGGGTGCTGAGGCTGTTTGGGGTGAACATGGAATGCCAACCTGATAATGATTCCCAAAACTCCACAACACAGGGTACACTTACCCACCACTTATACTCCCATCAAACTTCTTATTCTTCTTCAAACCCTCACCATCACATGCTACCTCAACAACCATAA 861 0.5459 MSINHYSPETTLYWTSEQQQQEAATWLSNSHTPRFNLNDEEEDEDDVVVSDNAQGSANLTQQEEKEAMFEKPLTPSDVGKLNRLVIPKQHAEKHFPLDSSGGDSAKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLHAGDVVLFHRHRTHPQRFFITCTRRQPHTTPPAQVSTTARSSFYSAHPYPTHHLPFPYQQPHSLHAPGGGSQGQNETTPGGNSSSGRVLRLFGVNMECQPDNDSQNSTTQGTLTHHLYSHQTSYSSSNPHHHMLPQQP 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03225 286 CDD B3_DNA 68 161 IPR003340 GO:0003677
Pumo5g03225 286 Gene3D - 63 179 IPR015300 -
Pumo5g03225 286 Pfam B3 DNA binding domain 69 172 IPR003340 GO:0003677
Pumo5g03225 286 SMART B3_2 69 173 IPR003340 GO:0003677
Pumo5g03225 286 MobiDBLite consensus disorder prediction 213 235 - -
Pumo5g03225 286 MobiDBLite consensus disorder prediction 202 235 - -
Pumo5g03225 286 ProSiteProfiles B3 DNA-binding domain profile. 69 174 IPR003340 GO:0003677
Pumo5g03225 286 MobiDBLite consensus disorder prediction 25 49 - -
Pumo5g03225 286 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 19 257 IPR044800 GO:0003700
Pumo5g03225 286 SUPERFAMILY DNA-binding pseudobarrel domain 66 175 IPR015300 -
Pumo5g03225 286 MobiDBLite consensus disorder prediction 267 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03225 Pumo-Chr5 81226187 81227576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03225 65 260 RAV Transcription Factor Family AT5G06250 51.415 6.28e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo5g03225 B3 5.3e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03225 K09287 - gmx:100781153 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03225 5 81226187 81227576 Pumo5g03225 5 81226187 81227576 ECH
Pumo5g03225 5 81226187 81227576 Pumo3g03065 3 55650339 55651472 PCT