Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo5g03220 | ATGGCGGCCGTCAGAAAAATAATTGAGGCCAATAAAAATAAAATCTTGTCGCCATCTCTTCTTTCTTTTCGCCGGGGAATTGCTTACAAGCTTTTCGTTGGAGGGCTGTCCTTCTACACCACAGAGAAAGCATTGTCAGATGCGTTCTCCAATTACGGGCAAGTTATTGAAGCCAAAATTGTAACAGATAGGTTGTCAGACAGATCTAAGGGATTTGGGTTTGTCACCTTTGCTTCTCAAGACGAGGCCGAGAATGCCATAGAAGACATGAAAGGAAAGACATTAAATGGACGTGTTATCTTTGTTGATTATGCAAAACCCAATATCAACACTCGTGGTGGAATGCCAATTGCTAGAGGACCTCCTGAACCAACACCAGATACTTGA | 387 | 0.4264 | MAAVRKIIEANKNKILSPSLLSFRRGIAYKLFVGGLSFYTTEKALSDAFSNYGQVIEAKIVTDRLSDRSKGFGFVTFASQDEAENAIEDMKGKTLNGRVIFVDYAKPNINTRGGMPIARGPPEPTPDT | 128 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo5g03220 | 128 | SUPERFAMILY | RNA-binding domain, RBD | 29 | 120 | IPR035979 | GO:0003676 | |
Pumo5g03220 | 128 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 31 | 100 | IPR000504 | GO:0003723 | |
Pumo5g03220 | 128 | Gene3D | - | 24 | 123 | IPR012677 | - | |
Pumo5g03220 | 128 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 29 | 107 | IPR000504 | GO:0003723 | |
Pumo5g03220 | 128 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED | 26 | 110 | - | - | |
Pumo5g03220 | 128 | SMART | rrm1_1 | 30 | 103 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo5g03220 | Pumo-Chr5 | 81184492 | 81186207 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo5g03220 | 31 | 106 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 32.895 | 3.85e-08 | 48.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo5g03220 | - | - | gmx:100527079 | 237.654 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pumo5g03220 | 5 | 81184492 | 81186207 | Pumo5g03220 | 5 | 81184492 | 81186207 | ECH |