Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03220 ATGGCGGCCGTCAGAAAAATAATTGAGGCCAATAAAAATAAAATCTTGTCGCCATCTCTTCTTTCTTTTCGCCGGGGAATTGCTTACAAGCTTTTCGTTGGAGGGCTGTCCTTCTACACCACAGAGAAAGCATTGTCAGATGCGTTCTCCAATTACGGGCAAGTTATTGAAGCCAAAATTGTAACAGATAGGTTGTCAGACAGATCTAAGGGATTTGGGTTTGTCACCTTTGCTTCTCAAGACGAGGCCGAGAATGCCATAGAAGACATGAAAGGAAAGACATTAAATGGACGTGTTATCTTTGTTGATTATGCAAAACCCAATATCAACACTCGTGGTGGAATGCCAATTGCTAGAGGACCTCCTGAACCAACACCAGATACTTGA 387 0.4264 MAAVRKIIEANKNKILSPSLLSFRRGIAYKLFVGGLSFYTTEKALSDAFSNYGQVIEAKIVTDRLSDRSKGFGFVTFASQDEAENAIEDMKGKTLNGRVIFVDYAKPNINTRGGMPIARGPPEPTPDT 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03220 128 SUPERFAMILY RNA-binding domain, RBD 29 120 IPR035979 GO:0003676
Pumo5g03220 128 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 100 IPR000504 GO:0003723
Pumo5g03220 128 Gene3D - 24 123 IPR012677 -
Pumo5g03220 128 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Pumo5g03220 128 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 26 110 - -
Pumo5g03220 128 SMART rrm1_1 30 103 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03220 Pumo-Chr5 81184492 81186207 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03220 31 106 Eukaryotic Initiation Factors Gene Family AT2G23350 32.895 3.85e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03220 - - gmx:100527079 237.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03220 5 81184492 81186207 Pumo5g03220 5 81184492 81186207 ECH