Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03213 ATGGAAAATATGCCACCAGGTTATCGTTTCTACCCCACAGAAGAGGAGTTGATTTCCTTCTATCTTCACAATAAGCTTGAAGGAGAAAGGGAGGACATAAATCGAGTTATTCCAGTCGTTGATATATACGACTACAACCCATCCCAACTCCCACAAATTTCAGGAGAGGCGAGTATGAGAGACACGGAGCAATGGTTCTTTTTCATTCCGAGGCAAGAAAGTGAAGCCAGAGGAGGAAGACCAAAGCGTCTCACAACTACAGGGTACTGGAAGGCCACAGGGTCTCCTAATCATGTTTATTCTTCGGATAATCGCATCATTGGCATTAAAAGGACCATGGTCTTCTATAGTGGAAGAGCTCCAAACGGAACCAAAACCGATTGGAAGATGAATGAGTACACGGCCATCAAAGGTGAACCATCATCTTCTTCAAATAAGGCAGTTCCCACGTTAAGGAAGGAATTCAGTTTATGCCGTGTGTACAAAAAATCAAAGTGTTTGAGGGCATTTGATAGACGACCACCACCGAGAAAGGAAACAGTAAGCTATTCCGGTGCTCAAAAGGGTTCAACGTCTTATGATTATCATCATAAAATGGTGGGAAGAAGTGCAACGTGTTCACCAGAGAGTTCATCCTCCGGAGACCATGACCAACCCCTTCTTCACGGTGAGGAAGCTACCCAAATGGATGTTGACAGCTATGACCCTTTTTTGGATTGGGAGAAAGTGGATTTGTTCTTAGGATCAGAACCATGA 756 0.4405 MENMPPGYRFYPTEEELISFYLHNKLEGEREDINRVIPVVDIYDYNPSQLPQISGEASMRDTEQWFFFIPRQESEARGGRPKRLTTTGYWKATGSPNHVYSSDNRIIGIKRTMVFYSGRAPNGTKTDWKMNEYTAIKGEPSSSSNKAVPTLRKEFSLCRVYKKSKCLRAFDRRPPPRKETVSYSGAQKGSTSYDYHHKMVGRSATCSPESSSSGDHDQPLLHGEEATQMDVDSYDPFLDWEKVDLFLGSEP 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03213 251 MobiDBLite consensus disorder prediction 171 228 - -
Pumo5g03213 251 SUPERFAMILY NAC domain 2 163 IPR036093 GO:0003677|GO:0006355
Pumo5g03213 251 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 199 - -
Pumo5g03213 251 Gene3D NAC domain 13 167 IPR036093 GO:0003677|GO:0006355
Pumo5g03213 251 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Pumo5g03213 251 ProSiteProfiles NAC domain profile. 4 163 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03213 Pumo-Chr5 81089529 81091687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03213 7 243 NAC Transcription Factor Family AT5G22380 48.750 1.26e-74 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo5g03213 NAM 2.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03213 - - gmx:100800056 463.766