Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03202 ATGGATATATCAAATCCTGCAGCCTTAGTCAATGCGGAACTGTTGCACTTCTATGTTGGAAGGAGGGTACGGGTCATGATGCAGGTTGTGCGATCTGATGGTGGAGTTGTCATTGGAAAATCAACAGATGAGAAACAGCTAGTTGTAAAAGGATCACCCCCACCTGCTCCTCTTACAACTTTTGTAGAAGTTTTTGGTATTGTTAACAGTGACAATTCAATTGGTGCTGAGATATGGACCAATTTTGGTGATGCTATTGATAAGGAAATCTACAATAAGCTTTGTCAGCTTGCAAATGGAGAATTTAAACACTTGTTCCTGTGA 324 0.4043 MDISNPAALVNAELLHFYVGRRVRVMMQVVRSDGGVVIGKSTDEKQLVVKGSPPPAPLTTFVEVFGIVNSDNSIGAEIWTNFGDAIDKEIYNKLCQLANGEFKHLFL 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03202 107 Pfam Replication factor A protein 3 4 103 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pumo5g03202 107 CDD RPA3 6 99 - -
Pumo5g03202 107 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 107 - -
Pumo5g03202 107 Gene3D - 3 107 IPR012340 -
Pumo5g03202 107 SUPERFAMILY Nucleic acid-binding proteins 5 106 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03202 Pumo-Chr5 80976108 80978519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03202 1 107 Core DNA Replication Machinery Family AT4G18590 63.551 3.51e-49 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03202 K10740 - gmx:100306641 194.126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03202 5 80976108 80978519 Pumo5g03202 5 80976108 80978519 ECH
Pumo5g03202 5 80976108 80978519 Pumo3g02338 3 35604390 35616036 PCT