Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03201 ATGCAAAAAATGCCTGGGACAAGGCAGAGAGATGTAACGGCCCAAAATCCAGAGTCACCAGAGGGAAACAGTGAACCTGAGAAACCTACAGATTCTGATGAGAAAGTAGACTTTGATGGGGACAATGATCAAGAGGAGACAATGGAGGAAGAACTTGAGTATGAAGAAGTAGAGGAGGAGGAAGAAGTGGAAGAGGAAGAAGAGGAGGAAGAAGTGGAAGAGGAAGAAGAAGAAGAGACTAAGCCCTCAGATGATGAAGATGAGACAAGAGTGGCAGACACTAAGGATGAAGTTGAGAAAAAGAAACATGCTGAGCTTCTTGCGCTTCCACCTCATGGGTCTGAGGTTTACATTGGGGGCATTCCTCAAAAAGTTTCTGAAGAAGATTTGAGGGTCTTTTGTCAATCTGTGGGAGAAGTTTCAGAGGTTAGGATAATGAAGGGAAAAGAATCCGGTGAAGCAAAAGGTTATGCTTTTGTGACCTTCAAGACAAAAGAATTGGCATCTAAGGCTATTGAGGAGCTGAACAACTCTGAATTTAAGGGAAAAAGAATAAAGTGCTCAACATCTCAAGTTAAGCACAAGTTGTTCATTGGTAATGTTCCTAGATATTGGACTGAAGGAGATATGAAGAAAGTCGTTGCAGAGATTGGCCCTGGAGTAATTTCTGTGGAACTGTTGAAGGACCCACAGAATTCTGGCCGTAATCGGGGATTTGCTTTTATTGAGTATTACAATCATGCTTGTGCAGAATATTCGAGGCAGAAAATGTCAAACTCAAACTTTAAACTTGACAGCAATGCTCCAACAGTGAGCTGGGCTGATCCAAGGAATTCTGAATCATCTGCAATCTCTCAGGTAAAATCAGTGTATGTAAAGAACCTTCCAGAAAACATTACTCAGGATCGTCTTAAGGAGCTGTTTGAACATCATGGAAAGATCACAAAAGTGGTTCTCCCTTCTGCTAAAGCCGGGCAAGAAAAGAGCAGATATGGTTTTGTGCATTTTGCTGAAAGGTCAAGTGCCATGAAGGCTTTGAAGAACACGGAGAAATATGAAATTGATGGACAAACATTGGAGTGTTCACTAGCGAAGCCACAAGCAAATTCACAGAAGCCAGCTTTACTTCCCACTTATCCACCTCATTTTGGTTATGGTATGGTTGGTGGTGCTATAGGTGCAGGATATGGTGCTACTGGCTTTGCACAACCACTGATGTATGGTCCCGGACCAACCCCTGCTGGCATGGCAATGCCAATGCTTTTACCAGATGGAAAGATTGGATATTTATTGCAACAGCCAGGGTTTCAACAGCCTGCTCCAATGCCAGTATTCCAACATGGGAGGAGTGGTGGTGGTAGCTCAAGAGGTGGGAAGCGCAGTAATGATAATAACCGCAATCGTGGGCATGGCCGATATCATCCCTACTAG 1431 0.4354 MQKMPGTRQRDVTAQNPESPEGNSEPEKPTDSDEKVDFDGDNDQEETMEEELEYEEVEEEEEVEEEEEEEEVEEEEEEETKPSDDEDETRVADTKDEVEKKKHAELLALPPHGSEVYIGGIPQKVSEEDLRVFCQSVGEVSEVRIMKGKESGEAKGYAFVTFKTKELASKAIEELNNSEFKGKRIKCSTSQVKHKLFIGNVPRYWTEGDMKKVVAEIGPGVISVELLKDPQNSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLDSNAPTVSWADPRNSESSAISQVKSVYVKNLPENITQDRLKELFEHHGKITKVVLPSAKAGQEKSRYGFVHFAERSSAMKALKNTEKYEIDGQTLECSLAKPQANSQKPALLPTYPPHFGYGMVGGAIGAGYGATGFAQPLMYGPGPTPAGMAMPMLLPDGKIGYLLQQPGFQQPAPMPVFQHGRSGGGSSRGGKRSNDNNRNRGHGRYHPY 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03201 476 Gene3D - 195 275 IPR012677 -
Pumo5g03201 476 SUPERFAMILY RNA-binding domain, RBD 284 371 IPR035979 GO:0003676
Pumo5g03201 476 Gene3D - 9 194 IPR012677 -
Pumo5g03201 476 MobiDBLite consensus disorder prediction 438 476 - -
Pumo5g03201 476 MobiDBLite consensus disorder prediction 85 99 - -
Pumo5g03201 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 192 IPR000504 GO:0003723
Pumo5g03201 476 Coils Coil 40 80 - -
Pumo5g03201 476 Gene3D - 277 395 IPR012677 -
Pumo5g03201 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 186 IPR000504 GO:0003723
Pumo5g03201 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 359 IPR000504 GO:0003723
Pumo5g03201 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 262 IPR000504 GO:0003723
Pumo5g03201 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 366 IPR000504 GO:0003723
Pumo5g03201 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 276 IPR000504 GO:0003723
Pumo5g03201 476 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 15 438 - -
Pumo5g03201 476 SMART rrm2_1 289 362 IPR003954 GO:0003676
Pumo5g03201 476 SMART rrm2_1 115 188 IPR003954 GO:0003676
Pumo5g03201 476 CDD RRM_SF 116 188 - -
Pumo5g03201 476 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 195 275 - -
Pumo5g03201 476 MobiDBLite consensus disorder prediction 1 23 - -
Pumo5g03201 476 MobiDBLite consensus disorder prediction 36 84 - -
Pumo5g03201 476 SUPERFAMILY RNA-binding domain, RBD 111 279 IPR035979 GO:0003676
Pumo5g03201 476 SMART rrm1_1 115 188 IPR000504 GO:0003723
Pumo5g03201 476 SMART rrm1_1 195 272 IPR000504 GO:0003723
Pumo5g03201 476 SMART rrm1_1 289 362 IPR000504 GO:0003723
Pumo5g03201 476 MobiDBLite consensus disorder prediction 1 99 - -
Pumo5g03201 476 FunFam RNA recognition motif-containing protein 30 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03201 Pumo-Chr5 80967906 80974746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03201 116 476 Eukaryotic Initiation Factors Gene Family AT2G23350 23.645 1.36e-19 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03201 K13161 - gmx:100798476 729.939