Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03172 ATGGCCGAAGAACACCGATGCCAAGCTCCCGAAGGTCACAGACTCTGCGCCAACAACTGCGGCTTCTTCGGTAGCCCCGCCACCATGAATCTCTGTTCCAAATGCTACAGAGACATCCGTTTGAAGGAAGAAGAACAAGCCAAAACCAAATCCACGATCGAAACCGCTCTCTCTGCATCTTCCTCTGCCACCAGCACCATCGCAACCGCCGCCGTTGCCTCCGTCACGGATTCCTTGCCGGCGCCGGTTGAATCCCTCCCTCAACCGCCGGTGGTGGTTTCGCCAGATGTATCGGCGGCACCGTTTCAGGCTAACCGGTGCGGCGCGTGTAGGAAGCGCGTGGGGTTGACCGGGTTCAAGTGCAGGTGCGGAACCACGTTTTGTGGGACCCACAGGTACCCCGAGAAACACGCGTGTGGCTTCGATTTCAAGGCGGTGGGGAGAGAGGAGATAGCACGGGCGAATCCCGTGATCAAAGGCGAGAAGCTACGGAGGATTTAA 501 0.5828 MAEEHRCQAPEGHRLCANNCGFFGSPATMNLCSKCYRDIRLKEEEQAKTKSTIETALSASSSATSTIATAAVASVTDSLPAPVESLPQPPVVVSPDVSAAPFQANRCGACRKRVGLTGFKCRCGTTFCGTHRYPEKHACGFDFKAVGREEIARANPVIKGEKLRRI 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03172 166 Gene3D - 84 162 IPR035896 -
Pumo5g03172 166 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Pumo5g03172 166 SMART AN1_Zf_4 107 144 IPR000058 GO:0008270
Pumo5g03172 166 Pfam AN1-like Zinc finger 107 143 IPR000058 GO:0008270
Pumo5g03172 166 Gene3D - 1 66 - -
Pumo5g03172 166 SUPERFAMILY AN1-like Zinc finger 95 161 IPR035896 -
Pumo5g03172 166 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 58 - -
Pumo5g03172 166 ProSiteProfiles Zinc finger AN1-type profile. 101 147 IPR000058 GO:0008270
Pumo5g03172 166 FunFam Zinc finger AN1-type containing 6 84 162 - -
Pumo5g03172 166 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Pumo5g03172 166 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Pumo5g03172 166 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03172 Pumo-Chr5 80682981 80684304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03172 1 166 C2H2 Transcription Factor Family AT3G52800 51.176 9.65e-53 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03172 - - gmx:100527251 266.159