Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03162 ATGGGTTCATTCTCTGGCACTTGTGAAATAGTTGAAGCAAGGGAGGAGCTAAATACAAGGAAAGCTCCTGGGGTTTATCAGTCCAGTTCTGAGTGTAGCACGTCTGAGAAAAATCAGAAACTTTCGGTGCTGAAATTGGGATACAAGGATGATCTAGATGATGATATCAACAAGCTTTTTGAATCGATTGCTCTTAAATCTTCATCAAGGGATTTGAGCCTTTTCTCAGATGGCACAAGTCCTAGGCTGAAAAGTGCATTGAAAAAGCCAATTACAATGGGTGTTCCTCGGTCCCCAAGAGTTGGGACTTCTGAGCCTGTTAATTTGAAGCAAGCATTAAGAGACCTTTGTATATCTAAGGCATCAGAAATGGCTGCTATGAGACGATTATCAAAGTCAACAGCTTCTCCAAGATTATCTGAAGTTGGGAAGATACAGACATTGTACAATTCAGTTGTAGCTGAAACCAGTCGATCTGGGTCTTCCTTTGTTGAGAGCAAGGGGCGTCAAATTGAAATATCTCTAGTGCCACAAAAAGGCAAAACCCTTTCCTTGGAGAAAACCTCTCATTCTTATCAAACTTCCCAAATTGCATCGTCGAGCCGAAACATTCATTCGTCTCGGGAAATTGCTGTTGCAACTACTAAATATGATGCTGTGACTTCATTGATACAAAGTGATTTGGCATGCTCATCAAGTAAAGTTGGGATTCAATCACAACGAGTGGTTCCTGTTGAAACAGAAGAACAAGCATCTGCCTCTTCTCCCTCTCTTTATAATACATTTGGAAGCAAATCAGAGGTGCCCAAAAATGCTTCTTCCCCTAAAAAGTTGGGAAATAAAGCATTTGTGTCAAATACTGGGAAGAAAGTTAGGTTGCAAACAGTATCTTCATCTACTTCTGTAAATGACAACAGAGTTAACAAACTGCCACGCCATGCCCCCCGCACTGTTAAATCGGTCATCAAGAACAAGAATCTGAGTAAGAAGAAACAAAAGGAGGATTCAGGTTCTGCTTTATGTGGTCCTACGCCCAATGAAGTTAATAAGCCAGTTCCTGGTACACCTCGGCTAATTTGTGAGAGATGTAGGTGTGCTTTGGAAAATACAAGTGAAGAAAAAAACCAAGATATTGTGGCATTGGACTCTACCAGTCCTGGAAATGGAGTAAACTCGAGTAATGTGCACTCTGGTTCAAATAAACCTGGTTTGGTGTCAAGTAGTGTTAATAAAAGCAAAACAGTTGGAAAAGTGAAGAACTCCAAGTTGAAAGAGCAACTTGAATTTTCACAAAGTTCAAAGAGTAGTCAAGGTGAGTACAGTAGTAGTACAAGTACCAGTGATGAGAGCAATGTAAGTGGTTCAAGTCGTAGCACTAGGCCTCACATGTCAAAGGATGTCAGGTGGGCAGCCATACGACATGCTCAAATGCAGTATGGAGTCTTGGGCTTGAGACACTTCAATCTTTTAAAGAAACTTGGTTGTGGAGACATTGGGACTGTATATCTGGCGGAACTAATTGGCACTAGCTGCTTGTTTGCTATTAAGGTCATGGACAATGAATTTTTGGAAAGAAGAAAGAAGATGCCTAGGGCTCAAACTGAAAGAGAAATATTAAGGATCCTGGATCATCCTTTTCTTCCCACAATGTATGCACAATTTACATCAGATAATCTATCGTGTCTGGTCATGGAGTATTGTCCAGGTGGAGATCTTCATGTTCTACGGCAGAAGCAGCTTGGTAGATATTTCTCGGAGCCAGCAGCAAGGTTTTATGTTGCTGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTTGGAGTTGTTTACCGTGATTTGAAACCCGAAAACATTCTTGTTCGGGAAGATGGCCACATTATGCTCACAGATTTTGATCTGTCCCTGAGGTGTGCTGTTAACCCAATGCTTCTGAAATCATCTTCTGATGTGGACCCTGCAAAAATTTCTGGTCTAAGTGCACAGTCAAGTTGCATTGAGCCATTCTGCATTGAACCATCTTGTCAAGTTCCATGCTTCAGCCCAAGATTGCTACCGGCTGCTGCAAAAGCAAGGAAACTAAAAGTTGATCTTGCAGCCCAGGTCAGATCATTGCCGCAGCTTGTGGCCGAGCCCACTGATGCAAGATCAAACTCATTTGTTGGTACACATGAATACTTGGCTCCTGAGATCATCAAAGAAGAGGGACATGGAGCTGCAGTTGACTGGTGGACATTTGGTGTTTTTCTCTATGAACTTTTATATGGTAGAACACCCTTTAAAGGTTCAAACAATGAAGAAACATTGGCCAACGTAGTGTTGCAGGGTCTTAGATTCCCTGAGCACCCGAATGTTAGTTTCCATGCAAAGGATCTGATTAGAGGGTTGTTAGTTAAAGAGCCTGAAAACCGTTTGGGTTCAGAGAAAGGGGCTGCTGAGATTAAACAGCATCCCTTCTTTGAGGGCCTTAACTGGGCCTTAATTCGTTGTGCCATCCCTCCAGAACTTCCAGACTTCTATGATTTTGGTGTTTCAGACATGATGAACTCACAGGGCAAGGGTGCTAAGTACTTAGAGTGTAAAGTAGGAGAGCATGTAGAATTCGAGTTGTTTTAA 2613 0.421 MGSFSGTCEIVEAREELNTRKAPGVYQSSSECSTSEKNQKLSVLKLGYKDDLDDDINKLFESIALKSSSRDLSLFSDGTSPRLKSALKKPITMGVPRSPRVGTSEPVNLKQALRDLCISKASEMAAMRRLSKSTASPRLSEVGKIQTLYNSVVAETSRSGSSFVESKGRQIEISLVPQKGKTLSLEKTSHSYQTSQIASSSRNIHSSREIAVATTKYDAVTSLIQSDLACSSSKVGIQSQRVVPVETEEQASASSPSLYNTFGSKSEVPKNASSPKKLGNKAFVSNTGKKVRLQTVSSSTSVNDNRVNKLPRHAPRTVKSVIKNKNLSKKKQKEDSGSALCGPTPNEVNKPVPGTPRLICERCRCALENTSEEKNQDIVALDSTSPGNGVNSSNVHSGSNKPGLVSSSVNKSKTVGKVKNSKLKEQLEFSQSSKSSQGEYSSSTSTSDESNVSGSSRSTRPHMSKDVRWAAIRHAQMQYGVLGLRHFNLLKKLGCGDIGTVYLAELIGTSCLFAIKVMDNEFLERRKKMPRAQTEREILRILDHPFLPTMYAQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRYFSEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCAVNPMLLKSSSDVDPAKISGLSAQSSCIEPFCIEPSCQVPCFSPRLLPAAAKARKLKVDLAAQVRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKEEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLANVVLQGLRFPEHPNVSFHAKDLIRGLLVKEPENRLGSEKGAAEIKQHPFFEGLNWALIRCAIPPELPDFYDFGVSDMMNSQGKGAKYLECKVGEHVEFELF 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03162 870 MobiDBLite consensus disorder prediction 312 326 - -
Pumo5g03162 870 ProSiteProfiles Protein kinase domain profile. 487 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03162 870 SMART serkin_6 487 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03162 870 MobiDBLite consensus disorder prediction 247 307 - -
Pumo5g03162 870 FunFam serine/threonine-protein kinase D6PK-like 714 837 - -
Pumo5g03162 870 FunFam Serine/threonine-protein kinase D6PK-like 485 570 - -
Pumo5g03162 870 MobiDBLite consensus disorder prediction 374 463 - -
Pumo5g03162 870 PANTHER FLIPPASE KINASE 1-RELATED 265 840 - -
Pumo5g03162 870 FunFam serine/threonine-protein kinase D6PK-like 571 638 - -
Pumo5g03162 870 Pfam Protein kinase domain 716 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03162 870 Pfam Protein kinase domain 488 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03162 870 ProSitePatterns Serine/Threonine protein kinases active-site signature. 608 620 IPR008271 GO:0004672|GO:0006468
Pumo5g03162 870 Gene3D Transferase(Phosphotransferase) domain 1 712 828 - -
Pumo5g03162 870 MobiDBLite consensus disorder prediction 247 353 - -
Pumo5g03162 870 CDD STKc_phototropin_like 485 837 - -
Pumo5g03162 870 MobiDBLite consensus disorder prediction 374 416 - -
Pumo5g03162 870 MobiDBLite consensus disorder prediction 425 460 - -
Pumo5g03162 870 Gene3D Transferase(Phosphotransferase) domain 1 567 635 - -
Pumo5g03162 870 SUPERFAMILY Protein kinase-like (PK-like) 461 843 IPR011009 -
Pumo5g03162 870 Gene3D Phosphorylase Kinase; domain 1 485 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03162 Pumo-Chr5 80551242 80556484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03162 1 870 AGC Kinase Gene Family AT3G52890 52.079 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Pumo5g03162 Pkinase 2.6e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03162 - K08286 gmx:100792120 1547.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03131 3 57592012 57596704 Pumo5g03162 5 80551242 80556484 ECH
Pumo5g03162 5 80551242 80556484 Pumo5g03162 5 80551242 80556484 ECH
Pumo5g03162 5 80551242 80556484 Pumo3g03131 3 57592012 57596704 PCT