Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03156 ATGGACTTCCATCTGAAGCAATGGAGAAACCAGCATGAGTCAGAGGAACAACATTCTACAAAGATGCCAAAACTTCTCCCTGAATCCCATCAACAGCCACAAACACAATCATCTGCCTCTGCACTCCCTTTGTTTGTACCTGAACCCAACAGCAAAGTCAGCACCCTGTCAGATTCAACATTAGCTGCTTCTGTTACTACCACTAACAGATTTCCCAGGATGGGGAGCTACTTCAGCTTGTCTCAGTGGCAGGAACTTGAGTTGCAGGCTTTGATATTCAGGTACATGTTGGCTGGTGCTGCTGTTCCTTCTGAACTCCTTCAACCAATCAAGAAAAGCCTTCTTCACTCCCCTCACTATTTCCTCCATCACCCTCTCCAGCATTACCAACCTGCTGCTTTGTTGCAATCAGGGTATTGGGGTAGAGGAGCAATGGATCCGGAGCCAGGGCGGTGCCGGAGAACCGACGGGAAGAAGTGGCGGTGCTCGAGGGACGTGGTGGCTGGGCAAAAGTACTGTGAGCGCCACATGCATCGTGGAAGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAACTAGTGCTATTAATTGTGGTGGTGGTGGATCTCTAGGACTAAGTGCTCCGTCTTCCATTTCTTCACCGCCCTTGGCCACTGCTTCACTCAAATCCCCTTTTGATCTTCTTCATCTTAATGAACGTTCCTCTGGGACCAAGAATGAAGACAAGAGCCTGTTTGAAAATGAAGATCATGTGGGTGGGGATGGCAGATCAGGTGGCCATATGCTGAGGCATTTCTTCGATGATTGGCCACGATCACTGCAAGATTCTGACAACGTTGAAAACAATGCTGCCCGGATGAACTCGGCCACATGCCTCTCTATTTCAATGCCCGGAAATGCTTCCTCGGATGTGTCATTGAAATTGTCCACGGGCTATGGAGAGGACCCGGGCCCAAGAAATGACAATGTGGGCCTCGAGGCTGAGCAACTGCAGTTGAATTGGGCCGGAGGATGGGCCTCGTCTAATCAAGTGGCTTCAATGGGAGGACCACTTGCTGAGGCACTCAGATCATCTACTTCAACTTCATCTCCCACTAGTGTATTGCATCACTTGCCTCGTGGTTCTGGATCTGAGACCAGCTTTATTAGCACCTGA 1161 0.4978 MDFHLKQWRNQHESEEQHSTKMPKLLPESHQQPQTQSSASALPLFVPEPNSKVSTLSDSTLAASVTTTNRFPRMGSYFSLSQWQELELQALIFRYMLAGAAVPSELLQPIKKSLLHSPHYFLHHPLQHYQPAALLQSGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPTSAINCGGGGSLGLSAPSSISSPPLATASLKSPFDLLHLNERSSGTKNEDKSLFENEDHVGGDGRSGGHMLRHFFDDWPRSLQDSDNVENNAARMNSATCLSISMPGNASSDVSLKLSTGYGEDPGPRNDNVGLEAEQLQLNWAGGWASSNQVASMGGPLAEALRSSTSTSSPTSVLHHLPRGSGSETSFIST 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03156 386 MobiDBLite consensus disorder prediction 1 38 - -
Pumo5g03156 386 ProSiteProfiles QLQ domain profile. 77 112 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pumo5g03156 386 MobiDBLite consensus disorder prediction 353 386 - -
Pumo5g03156 386 Pfam WRC 147 189 IPR014977 -
Pumo5g03156 386 PANTHER GROWTH-REGULATING FACTOR 5 35 305 IPR031137 GO:0005634|GO:0006351|GO:0032502
Pumo5g03156 386 MobiDBLite consensus disorder prediction 1 23 - -
Pumo5g03156 386 MobiDBLite consensus disorder prediction 237 258 - -
Pumo5g03156 386 Pfam QLQ 78 110 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pumo5g03156 386 ProSiteProfiles WRC domain profile. 146 190 IPR014977 -
Pumo5g03156 386 MobiDBLite consensus disorder prediction 24 38 - -
Pumo5g03156 386 SMART QLQ_2 76 112 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03156 Pumo-Chr5 80466815 80469974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03156 1 373 GRF Transcription Factor Family AT3G52910 51.531 2.41e-96 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Pumo5g03156 WRC 2.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03156 - - gmx:100814842 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03156 5 80466815 80469974 Pumo5g03156 5 80466815 80469974 ECH
Pumo5g03156 5 80466815 80469974 Pumo3g03133 3 57602565 57605519 PCT