Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03152 ATGCGTTCCAGCAACGGTGCATCAAGCAGCAGAGCCTCTAACGGTAACACAGGGCGCCACCCTGTGTACCGTGGAGTGAGGCGTAGGAGTAGTGGCAAATGGGTTTCTGAAATCCGTGAGCCCAAAAAACCTAACAGGATTTGGTTAGGAACATTTGCCACCCCTGAAATGGCTGCTATTGCCTATGACGTGGCAGCGCTTGCTCTTAAGGGTAAGGATGCTGAACTCAACTTCCCTAACTCGGCTTCCTCCCTCCCTGTTCCTGCATCATCCGCTGCTCGTGACATTCAGATGGCTGCAGCTAGTGCTGCAGCCGCTGTCGGAGCAGCGAATGATGCATTGGAAGGAAGCCGAGGAGGGGATGTTTCGGTTTCCTTGGCACAAGAGTTTTCAGGGGGAAACTTAAACCACTTTGTGGATGAGGACTTGATCTTTGATATGCCGAATATTCTGGTCAATATGGCTGAAGGAATGCTACTCAGCCCTCCTCGTTTTGATAATTTTGCTGGTACCGACTATGACTACATGGATGAAGATCCTAACCTGTGGGGGTTCCCTTACTAG 564 0.5071 MRSSNGASSSRASNGNTGRHPVYRGVRRRSSGKWVSEIREPKKPNRIWLGTFATPEMAAIAYDVAALALKGKDAELNFPNSASSLPVPASSAARDIQMAAASAAAAVGAANDALEGSRGGDVSVSLAQEFSGGNLNHFVDEDLIFDMPNILVNMAEGMLLSPPRFDNFAGTDYDYMDEDPNLWGFPY 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03152 187 Pfam AP2 domain 21 71 IPR001471 GO:0003700|GO:0006355
Pumo5g03152 187 MobiDBLite consensus disorder prediction 1 31 - -
Pumo5g03152 187 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Pumo5g03152 187 MobiDBLite consensus disorder prediction 1 17 - -
Pumo5g03152 187 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 17 183 IPR045277 GO:0003700
Pumo5g03152 187 CDD AP2 23 81 IPR001471 GO:0003700|GO:0006355
Pumo5g03152 187 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Pumo5g03152 187 PRINTS Ethylene responsive element binding protein signature 61 81 IPR001471 GO:0003700|GO:0006355
Pumo5g03152 187 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Pumo5g03152 187 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Pumo5g03152 187 FunFam Ethylene-responsive transcription factor 2 21 80 - -
Pumo5g03152 187 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03152 Pumo-Chr5 80356411 80357682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03152 12 186 AP2-EREBP Transcription Factor Family AT2G36450 63.536 8.39e-59 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo5g03152 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03152 - - gmx:100813781 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03152 5 80356411 80357682 Pumo5g03152 5 80356411 80357682 ECH
Pumo5g03152 5 80356411 80357682 Pumo3g03136 3 57715269 57716609 PCT
Pumo3g03135 3 57675703 57676354 Pumo5g03152 5 80356411 80357682 PCT