Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03151 ATGGAAATGGAGGACCATCATCATCATCATCACCATCATCATCATGAGCAGCAGCAACAGTATGGCATCACTGATCTGAGGCAACTCGTGAACGGGCCGCGGTCGAGCCATTTCCCAGCCATGCCGCCGCAGCCCAAGGCGGAGCTGTTCCCCGGCGGCGGCCACCCCAACCTGGCGGCGGCGACACAACAGCACTACGAGATGATGATGTTTGGTCGTCAAGTAGCCGACATAATGCCTCGTTGTCTTCACGACTTTGCCGCCACCGATTCCGCCACGAATAACACCAGCATCGCCGTCGCCACTCCCACCACCACCACTAGCGCTTCCACTCCTCCGCTCAGTTGCTTAGAGGCTGAGACCGCAGGATGCATCGGTGGAGACGCCTCCACTGGAAGATGGCCCAGACAAGAGACTCTCACTCTTCTTGAGATCAGATCTCGCCTCGACTCTAAATTCAAAGAGGCTAATCAAAAAGGCCCCCTATGGGATGAAGTTTCTAGGATCATGTCTGAAGAACATGGATATCAAAGGAGTGGGAAGAAGTGCAGGGAGAAGTTTGAGAACCTGTACAAATATTACAAGAAGACAAAGGAGGGAAAAGCAGGAAGACAAGATGGGAAGCATTACAGGTTCTTTCGTCAACTTGAAGCCTTATATGGTGAAAACAGTAACCAAGCCTCGGTGCCAGAAACCAATTTTGGCAGTGGTAGCCTTCGTTTCCACACAAGCAGCCACAACCCTTCTCAAACAAATCAAGAAATGTTTCAGTCCCAGAAGCATTGTGACAGCGTCAGCCTCACCAACTCCACTGATTTGGACACGTCATCATCGGATGACAATGATCAGAACAGCACTGGGGGGCTCAAGGACAATGACTCCATGGAGAAGAGGAGAAAGAGGGTGAGTGGAAGAAGCTGGAAGGTGAAGATAAAGGACTTCATTGACTCACAGATGAGGAAGCTGGTGGAGAAGCAAGAGGAGTGGTTGGATAAACTCACTAAGACACTGGAGCAGAAGGAGAAGGAGAGGGTGTTGAGAGAAGAAGAGTGGAGGAGACAAGAAGCTGCAAGGTTGGAGAGGGAACACAAATTTTGGGCTAAAGAGAGGGCATGGATTGAAGCAAGGGATGCTGCTTTAATGGAGGCTTTGCAGAAATTAACAGGAAATGAGATAATAAAGAGTACTCATTCTCCTGAGGGTATATTGGTAACTGGAATTCAAAACCACAGTGAAAACCAGAATGAAGATGGGAGTGAAATACTAAATAGCACTACTGCCAGAGGTGGAGCTGAAAGCTGGCCAGAATCTGAGATTACAAGGCTTCAACAGTTGAGAGCTGAGATGGAGACAAGGTATATGCAAAGTGGGTGTTCAGAAGAGGTTATGTGGGAGGAAATATCAACCAAAATGGCTTGTTTTGGTTACGAAAGGAGTGCTTTGGTGTTCAAAGAGAAATGGGAAAGTATCAGCAACTATGCAAGGAGTGCCAAGGATGGAAGCAAGAAGCGCAAGGAAGACTCAAGAGGTTGCTTTTACTTCGATAACAGTGACCAGTCTTCTCTGTATAACCAAGGAGGTGCCTATTGTGACATCAATGATCAAAGGCACGACACTGGAAGGCTGCAAACAAATGATGGTTCCTCACCTTCCAATTCAAATGTGGGAAATGCAGTTGCGGGTGATAACTGCTTTCCCTTCTTGATGACTGAGGGTGGAAATTTGTGGGAGAACTATAGCTTAAAGGTTAATAAAGCAAGCCAAAACCAGTGA 1773 0.4783 MEMEDHHHHHHHHHHEQQQQYGITDLRQLVNGPRSSHFPAMPPQPKAELFPGGGHPNLAAATQQHYEMMMFGRQVADIMPRCLHDFAATDSATNNTSIAVATPTTTTSASTPPLSCLEAETAGCIGGDASTGRWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGENSNQASVPETNFGSGSLRFHTSSHNPSQTNQEMFQSQKHCDSVSLTNSTDLDTSSSDDNDQNSTGGLKDNDSMEKRRKRVSGRSWKVKIKDFIDSQMRKLVEKQEEWLDKLTKTLEQKEKERVLREEEWRRQEAARLEREHKFWAKERAWIEARDAALMEALQKLTGNEIIKSTHSPEGILVTGIQNHSENQNEDGSEILNSTTARGGAESWPESEITRLQQLRAEMETRYMQSGCSEEVMWEEISTKMACFGYERSALVFKEKWESISNYARSAKDGSKKRKEDSRGCFYFDNSDQSSLYNQGGAYCDINDQRHDTGRLQTNDGSSPSNSNVGNAVAGDNCFPFLMTEGGNLWENYSLKVNKASQNQ 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03151 590 MobiDBLite consensus disorder prediction 411 437 - -
Pumo5g03151 590 FunFam trihelix transcription factor PTL-like 134 196 - -
Pumo5g03151 590 FunFam Trihelix transcription factor GT-2 434 496 - -
Pumo5g03151 590 Gene3D - 134 196 - -
Pumo5g03151 590 Gene3D - 434 495 - -
Pumo5g03151 590 CDD GT1 434 498 - -
Pumo5g03151 590 CDD GT1 133 198 - -
Pumo5g03151 590 MobiDBLite consensus disorder prediction 1 56 - -
Pumo5g03151 590 MobiDBLite consensus disorder prediction 534 555 - -
Pumo5g03151 590 MobiDBLite consensus disorder prediction 224 302 - -
Pumo5g03151 590 Pfam Myb/SANT-like DNA-binding domain 433 518 IPR044822 -
Pumo5g03151 590 Pfam Myb/SANT-like DNA-binding domain 133 219 IPR044822 -
Pumo5g03151 590 Coils Coil 323 350 - -
Pumo5g03151 590 ProSiteProfiles Myb-like domain profile. 126 191 IPR001005 -
Pumo5g03151 590 MobiDBLite consensus disorder prediction 411 431 - -
Pumo5g03151 590 MobiDBLite consensus disorder prediction 224 290 - -
Pumo5g03151 590 PANTHER FI21293P1 100 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03151 Pumo-Chr5 80321911 80325158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03151 16 585 Trihelix Transcription Factor Family AT5G03680 45.861 1.93e-147 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pumo5g03151 Myb_DNA-bind_4 2.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03151 - - gmx:100813245 1040.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03151 5 80321911 80325158 Pumo5g03151 5 80321911 80325158 ECH
Pumo5g03151 5 80321911 80325158 Pumo3g03137 3 57761387 57765166 PCT