Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03147 ATGAGCATGGAGAGCACGCGCAGATCGTTGGACAGATCGAGAGAACCGGGTCCCAAGAAGCCCCGATTGATCGAAGAACTCAGCGCCCGACAGTTACCTCAACGACAGCAAGGGTCTGCGGCAGTTACTACGTTGGCGTCTACGAGGTTTCGAACAAATGACAGAGACTCCGAAGGCGGTGGCGGCGGCGGCGGCGGGTACCAGCCGCAGCCTCCGCCGCACCAAGAGCTTGTAACTCAGTATAAGACCGCGCTTGCTGAGCTCACTTTCAATTCGAAGCCGATAATTACCAACTTGACTATTATTGCTGGAGAAAACCTATCTGCTGCCAAGGCAATTGCTGCCACTGTTTGTGCTAACATTCTAGAGGTTCCAAGTGATCAGAAACTGCCATCTCTTTATCTCTTAGACAGTATTGTTAAGAACATTGGGCGGGATTATATAAAATATTTTGCTACCAGATTACCTGAGGTATTCTGCAAGGCTTACAGACAGGTTGATCCTTGTGTCCATTCAAGTATGAAACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGTCCCTTCAGACGATTGAGAAGGAACTTGGCTTTGCACCTGCAGTCAATGGTTCAGCTTCAGTATCTGCTACAGTCAGGAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCTAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCAAGTAGGAGTAAAGGAGTAGTTAATGATATGACTGGAGCTGTTTTAAACTCAAACGAGGATTCGGAGAGGCCAGATAGAGCTTTGGGTGCTTCACGACCATGGCTGGATCCTAGGATTAACATGCTTAATAATCAGCACACTCATAGAGATGCATTTAATGATTCTGTTCCCGAAAAGAGCATTGATGGATCATACGGAGGCAGTGAATATAGTTCTGGCATTTCAAGTAATTTGGTCTCAGGGGCTGGAAGAACTGGAAGTAAGCTCATTGATTTAGGACATGACAAAACATGGTTCAAAACAGATGGTGGTGATGCAGATACCACATCTGGGCAAAGAAATGGTTTCAGTCTCAAGCGCAGTTTTTCAAATCATGAAGCACCAAAGTCCATGAATTTGGATGCACATCGTCAGCCAAGACAAAGCATAACTAACATACGGAGCAATGTGATGTCAGGTAACTGGAAAAATTCTGAAGAAGAGGAGTTCACGTGGGATGAGATGAACAATGGTTTGACTGATCATGGACCCAATGTATCTAGCAATTTGAGCACAGACTCATGGATGGCAGATGATGAAAATTTGGAAGGTGAAGATCACCTCCAAATCACACGCCCTTTTGGGGCAAAGGTTGATAGAGAAATATCCACTGTTAAGAAACAACTACCTGGTTTGGGGGCCCATCCACCGTCATCATGGCAATTGCAGAAGCACCACTCAATTGATAAGTTGAATCTGAAGCCAGGTTACTCAGAAGGATTTGTGTCCACTCTTAGTGGCTTACCAGCCAACGCAAATTCTTTGGCTGTCAAGAAGGGGAACCAATCAACTATGTCGAATGCAGTAGTAGGAATGGCCAAATTTGTGGGTCAACAATTTGATTCTGGGGAAACTGAATCCCCTTCTGGGCAGTCACCTTTGCGACAACAGTCTCCATCACTGCCAGGAACAGTACACCACCCTCATTCAATGCAAAATTTGGCTGAGCAAGAATTGCCCCCGAGTCTCAAAACCTCTCAATTTTTGGGAGGTCCGATAAGTCAGCATATTAGAGATCGCTCACCTACCCTTCGTCCCATTGTTCAGGTTGGTAACTTGAGAAGATCACAGGAAAAGGACATGCAGGGCCCATTATCTTCCGTGACGTCTTTTCGACCAAAGCTTCAGCAACAGCAGCTGGACCCATCTCAGACTGAAGTTACTGCTAAAACTAAGCTGCCCCAGTCTAAAGTTTCTTTAACCAGAGAAACTTCAGAACAGTTGACCACAAATAATTTGTCAGCTGCACCTGTCAAGAGTGGAATCATCCCCAAGAAATCAATTACCAGTAATCTGGATCCAAGGAAGCATCCATCTCAGACTGGGGTTCAGCCTACTCAGTCTGGTAGGTCTACCACATTAATTTCTTCAGGGTCTGCAGTGGCATCACCATCTTCATTAGATCCTCTGCATAATGATTCATCTACACTGCCAAAAAAGTCTCAAGGAAAGGCTGGACAACCACCACAAAGGCTTTCTACTCAAACACCTGCTTCCTCTAATGTGAGCAGTTCCTCAGCTCCGACCTTAAATGCTGCCAAAAATAATAAACTAAATCCATTTGCAAACCTTTTAAGCTCATTGGTTGCAAAGGGTTTGATATCTGCAGAAACAGAACCACCGACTACGGTACCAAGCGAGGCGCCGAAGGGATCCAAAGATCAAACTGAAATCATTACCACCAGTTGTTCTTTACCAGTTACATCAATTTCTGGTTCTGCAGCTGTCCCAGTATCGTCTTCCGGAGATGAGGTAGATGCTGCTACAAAAACCTATCTTGCCTCACCTCAATCAACTAGCACGGAAATAAAAAATCTCATTGGCTTTGATTTTAGACCTAATGTAATTCGAGAATTCCATCCACCTGTAATTAGGGAATTATTGGATGATTTCCCTCATCATTGCAAAATTTGCGGTATTAGGCTTAAACAAGAAGAACAGTTTAATAGACACTTGGAGTGGCATTCCACAAGAGAACATGGTCCAATTAAGGCATCAAGAAATTGGTACGCTAAGTCAAGTGATTGGATTGCTGGGAAGGCAGAATATTCATCCGAGTCTGAGTTTACTGATTCTGTCGATGTACAAGACATAAAAACAGACAGCAGTCAATTGGATACGATGATCCTAGCAGATGAAACCCAGTGTCTGTGTGTATTGTGTGGCGAGCTATTTGAAGATGTGTACTGTCATGAAAGGAACGAGTGGATGTTCAAAAGGGCTGTCTACATGAACTACTCAGATATCAATAGTGAGATGGAAAGTAGAAATGTGGGTCCCATCGTTCATGCCAAATGCTTATCAGAGAACTCAATTGTCACCAATTTGGATAATGATTAA 3102 0.4417 MSMESTRRSLDRSREPGPKKPRLIEELSARQLPQRQQGSAAVTTLASTRFRTNDRDSEGGGGGGGGYQPQPPPHQELVTQYKTALAELTFNSKPIITNLTIIAGENLSAAKAIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFATRLPEVFCKAYRQVDPCVHSSMKHLFGTWKGVFPPQSLQTIEKELGFAPAVNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQQSSRSKGVVNDMTGAVLNSNEDSERPDRALGASRPWLDPRINMLNNQHTHRDAFNDSVPEKSIDGSYGGSEYSSGISSNLVSGAGRTGSKLIDLGHDKTWFKTDGGDADTTSGQRNGFSLKRSFSNHEAPKSMNLDAHRQPRQSITNIRSNVMSGNWKNSEEEEFTWDEMNNGLTDHGPNVSSNLSTDSWMADDENLEGEDHLQITRPFGAKVDREISTVKKQLPGLGAHPPSSWQLQKHHSIDKLNLKPGYSEGFVSTLSGLPANANSLAVKKGNQSTMSNAVVGMAKFVGQQFDSGETESPSGQSPLRQQSPSLPGTVHHPHSMQNLAEQELPPSLKTSQFLGGPISQHIRDRSPTLRPIVQVGNLRRSQEKDMQGPLSSVTSFRPKLQQQQLDPSQTEVTAKTKLPQSKVSLTRETSEQLTTNNLSAAPVKSGIIPKKSITSNLDPRKHPSQTGVQPTQSGRSTTLISSGSAVASPSSLDPLHNDSSTLPKKSQGKAGQPPQRLSTQTPASSNVSSSSAPTLNAAKNNKLNPFANLLSSLVAKGLISAETEPPTTVPSEAPKGSKDQTEIITTSCSLPVTSISGSAAVPVSSSGDEVDAATKTYLASPQSTSTEIKNLIGFDFRPNVIREFHPPVIRELLDDFPHHCKICGIRLKQEEQFNRHLEWHSTREHGPIKASRNWYAKSSDWIAGKAEYSSESEFTDSVDVQDIKTDSSQLDTMILADETQCLCVLCGELFEDVYCHERNEWMFKRAVYMNYSDINSEMESRNVGPIVHAKCLSENSIVTNLDND 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03147 1033 ProSiteProfiles CID domain profile. 73 201 IPR006569 -
Pumo5g03147 1033 MobiDBLite consensus disorder prediction 1 74 - -
Pumo5g03147 1033 MobiDBLite consensus disorder prediction 235 259 - -
Pumo5g03147 1033 SUPERFAMILY ENTH/VHS domain 73 199 IPR008942 -
Pumo5g03147 1033 Gene3D - 70 198 IPR008942 -
Pumo5g03147 1033 MobiDBLite consensus disorder prediction 534 562 - -
Pumo5g03147 1033 MobiDBLite consensus disorder prediction 687 768 - -
Pumo5g03147 1033 Pfam CID domain 82 192 IPR006569 -
Pumo5g03147 1033 MobiDBLite consensus disorder prediction 609 671 - -
Pumo5g03147 1033 CDD CID_Pcf11 78 190 IPR047415 -
Pumo5g03147 1033 MobiDBLite consensus disorder prediction 1 26 - -
Pumo5g03147 1033 MobiDBLite consensus disorder prediction 235 273 - -
Pumo5g03147 1033 ProSitePatterns Zinc finger C2H2 type domain signature. 889 909 IPR013087 -
Pumo5g03147 1033 MobiDBLite consensus disorder prediction 577 768 - -
Pumo5g03147 1033 FunFam polyadenylation and cleavage factor homolog 4 70 198 - -
Pumo5g03147 1033 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 31 1024 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Pumo5g03147 1033 SMART 558neu5 76 198 IPR006569 -
Pumo5g03147 1033 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03147 Pumo-Chr5 80264377 80270768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03147 31 235 C2H2 Transcription Factor Family AT4G04885 52.174 1.78e-55 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo5g03147 CID 1.9e-13 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03147 K14400 - gmx:100788958 1823.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03147 5 80264377 80270768 Pumo5g03147 5 80264377 80270768 ECH