Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03145 ATGGGAGAGGATTCCCAACCAATAATAGAGTTATTAGGCTTGGGCCAAAGAGACGAGAAGGTGTCTCAACCGAAAATCAAGTTTAGAGCAGTATTTCGTGATTGGCTACTGCAGTTAACTTGGTCCCAAACACTGAAAGTGGAAGTGTCTCTTTCCGTCTCTTTTCAGCCAATAAATCATTGGCTGACTTTGACAAAAATATCTAGCCCCGCACCGAATCACAACAAGTTGGAGTTGGAGTCTTGCGTTCTCTTCTCTACTTACAAACGCAATTGCCAGGACACAATCTCAGCTTCTCTTCCAACAGAGGACATTGCACTTTCTGGCTCTCTTCCTTCCTCTAACATGAACACGTCTCTGTCTTCTTCCCAGTTACCTTCATCAAGCGCTGAGTTTGAGAAGGTAAATAGTGTGCCGCAGCCACTTGAATGCTTGCAAGGGAACCTGGTTCCGGCATTTCTATCCAAGACTTTCGACCTCGTCGACCATCCATCGCTGGATCCGATCATATCCTGGGGCTCCACCGGTGTTAGTTTCGTGGTGTGCGATCCTACCCTGTTTGCAAGACACGTCTTGCCAAGGAGTTTCAAGCATAACAATTTCTCCAGTTTTGTTCGCCAGTTAAACATTTATGTGGGTACTCTATATGTATTTTGA 657 0.4536 MGEDSQPIIELLGLGQRDEKVSQPKIKFRAVFRDWLLQLTWSQTLKVEVSLSVSFQPINHWLTLTKISSPAPNHNKLELESCVLFSTYKRNCQDTISASLPTEDIALSGSLPSSNMNTSLSSSQLPSSSAEFEKVNSVPQPLECLQGNLVPAFLSKTFDLVDHPSLDPIISWGSTGVSFVVCDPTLFARHVLPRSFKHNNFSSFVRQLNIYVGTLYVF 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03145 218 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 139 211 IPR027725 -
Pumo5g03145 218 Pfam HSF-type DNA-binding 153 211 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo5g03145 218 Gene3D - 146 214 IPR036388 -
Pumo5g03145 218 PRINTS Heat shock factor (HSF) domain signature 153 176 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo5g03145 218 PRINTS Heat shock factor (HSF) domain signature 204 216 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo5g03145 218 PRINTS Heat shock factor (HSF) domain signature 191 203 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo5g03145 218 SMART hsfneu3 149 218 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo5g03145 218 SUPERFAMILY "Winged helix" DNA-binding domain 151 211 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03145 Pumo-Chr5 80256101 80257002 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03145 138 211 HSF AT5G03720 74.324 6.00e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pumo5g03145 HSF_DNA-bind 1.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03145 K09419 - gmx:100788429 161.77