Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03140 ATGGAGTTTTGGGGTGTTGAGGTGAAAAGTGGAGAATCTCTCAAGGTTGATCCAGGAGATGACAAGATTATCCACCTTTCAAATGCATGCCTGGGGGATGTCACTAAGGATAAAGGAGGTGAACCAGTAGCCCTGTATGTGAAGTTTGGTAACCAGAAGCTTGTACTTGGAACGCTTTCTTCTGATAAATTTCCTCAGATATCTTATGATTTGATATTTGAGAAGGAATTTGAGCTATCCCATAACTGGAAAAATGGGAGTGTCTTCTTTACCGGATTTAAAGCTCAATCACAGTCGGAGTCTGATAATGATGAAGATTCTGATGATTTTGATGAAGATATTCCAGTTAGTGCTGCCAATGGGAAACCTGAGCTTGAGGTGAAGAATGGTGTCAAACCTGATGCAAATGAAGCTAAACAGAAGAAGATAGCAGATCCAAGGAAGAATGAGAAGGCTAAGGAAAAGGATGCAAATGGTGAAGATGAAGATTCATCCGAATCTGATTCTGATGATGATACAAGTGAAGAAGATAAGCCCATAGCGAATGGTGACATAGAAAGTAGTGATGGAGATGATGATAGCGATGAAGAGGAGGAGGATGATGATGATGAATCTGATGAGGAGGAGACACCCAAGAAGATTGAAGCAAGCAATAAGAGGACTGTTGACTCTTCTAAGAAAACACCTGTTCCTGTGAAGAAGGCAAAATTTGTTACTCCTCAGAAGACTGATAGCAAGAATGTTGTCCATGTTGCAACTCCTCACCCTTCTAAGCAGGCTGGTAAAGCAACTGCAAATAACAAGCAGCAGACTCCGAAGTCAGGTGGAGATTACAGCTGCAAGCCTTGCAACAGGTCATTTAAGACAGAAGATGCCTTAAGTTCTCATAATAAGGCCAAGCACAGTGCTAAGTGA 915 0.4164 MEFWGVEVKSGESLKVDPGDDKIIHLSNACLGDVTKDKGGEPVALYVKFGNQKLVLGTLSSDKFPQISYDLIFEKEFELSHNWKNGSVFFTGFKAQSQSESDNDEDSDDFDEDIPVSAANGKPELEVKNGVKPDANEAKQKKIADPRKNEKAKEKDANGEDEDSSESDSDDDTSEEDKPIANGDIESSDGDDDSDEEEEDDDDESDEEETPKKIEASNKRTVDSSKKTPVPVKKAKFVTPQKTDSKNVVHVATPHPSKQAGKATANNKQQTPKSGGDYSCKPCNRSFKTEDALSSHNKAKHSAK 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03140 304 ProSitePatterns Zinc finger C2H2 type domain signature. 280 301 IPR013087 -
Pumo5g03140 304 MobiDBLite consensus disorder prediction 127 160 - -
Pumo5g03140 304 MobiDBLite consensus disorder prediction 259 277 - -
Pumo5g03140 304 Gene3D Nucleoplasmin core domain 1 100 - -
Pumo5g03140 304 MobiDBLite consensus disorder prediction 210 230 - -
Pumo5g03140 304 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
Pumo5g03140 304 MobiDBLite consensus disorder prediction 96 304 - -
Pumo5g03140 304 FunFam Histone deacetylase HDT1 1 99 - -
Pumo5g03140 304 MobiDBLite consensus disorder prediction 161 175 - -
Pumo5g03140 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 278 304 IPR013087 -
Pumo5g03140 304 MobiDBLite consensus disorder prediction 186 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03140 Pumo-Chr5 80158202 80163442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03140 1 303 C2H2 Transcription Factor Family AT5G03740 42.038 6.71e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo5g03140 NPL 1.4e-10 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03140 - - ccaj:109796568 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03140 5 80158202 80163442 Pumo5g03140 5 80158202 80163442 ECH