Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03130 ATGAAAAAGGTTCGTCTTTGTCCCATAATCCTGGCACTGGCCTTGTGCTTGTGCATCCTGGCACCTGTTGCTGCAGGGCAAAATGATACGCTCGCCCTCACCGAATTCCGCCTCCAAACCGACACTCACGGCAACCTCCTCACCAACTGGACCGGCGGCGACGCATGCTCCGCCGCGTGGCACGGCGTCGAGTGCTCCCCAAACGGCAGAGTGGTGGGCCTCACCCTCCCTTCCCTCAACCTCCGAGGCCCAATTGATTCCCTCTCCACACTAACCTACCTTCGCTTCCTCGACCTCCACGAAAACCGCTTAAACGGCACCGTTTCACCTCTCTTAAACTGCACAAGCTTAGAACTGCTCTACCTCTCCCGCAACGACTTCTCCGGCGAGATTCCGCCGGAGATATCCTCCCTCCGGCTCCTCCTCCGCCTGGACATCTCCGACAACAACATCCGCGGTCCAATCCCCACCCAACTCAAAAAACTAACCCACCTCCTCACTCTACGGTTACAGAACAACGCCCTCTCCGGCCACGTCCCCGACCTTTCCGCTTCCCTCCAAAACCTCACCGAACTCAACGTCACCAACAACGAACTCCGCGGCCACGTCCCCGATTCCATGCTCACCAAATTCGGCAACGCCAGCTTCTCCGGAAACCACGCCCTCTGTGGGTCCACCCCGTTACCCAAATGCTCCGAAACAGAACCAGACACAGAGACCACGATAACCGTTCCTGCAAAACCGAGCTCGTTCCCTCAAACAAGTAGTGTTACCGTTACCGACACTCCAAAGAAGAAAGGGTTGAGTGCCGGTGTCATTGTTGCGATTGTGGTGGCGGTTTGCGTGGCGGTGCTGGTGGCGATGTCGTTCGTGGTGGCGCACTGTTGCGCCAGAGGTTACACCTCTGGTTCGGTGGTGGGGAGCGAGAGTGCGAAGAGGAAGAGTGGGAGTAGTTCTGGGAGCGAGAAGAAGGTGTATGGGAACGGTGGAAACTTCGATAGGGATAGGGATAGTGATGGGACGAATACTGAGACGGAACGGAGCAAGCTTGTGTTTTTCGATAGGAGGAACCAGTTTGAGTTGGAGGATCTGCTTCGAGCTTCGGCGGAGATGCTTGGAAAAGGATGCTTGGGAACGGTTTACAGAGCGGTGCTGGACGATGGCTGCACCGTGGCTGTGAAGAGACTCAAAGACGCTAACCCCTGCGAGAGGAACGAGTTTGAACAGTATATGGATGTTGTAGGGAAGCTCAAACACCCCAACATTGTTAGACTCAGAGCTTATTACTATGCCAAGGAAGAAAAGCTTCTTGTGTATGATTATCTCCCCAATGGAAGCATGCATGCACTTCTTCATGGGAACCGTGGTCCAGGAAGGATTCCGTTGGATTGGACCACGAGAATAAGCTTGGTGTTAGGTGCGGCTAGAGGGTTGGCGCGGATTCATGCGGAGTACAACGCGTCGAAGATACCTCACGGGAACGTGAAATCTTCCAACGTGCTTCTCGACAAGAACGGCGTCGCTTTAATCGCTGACTTTGGCTTGTCGCTGCTGTTGAACCCCGTTCACGCGATTGCGAGGTTGGGTGGGTACAGAGCGCCGGAACAAGCGGAGGTGAAGAGGCTGTCTCAGGAGGCTGACGTGTACGGTTTCGGAGTGTTGCTGTTGGAGGTTCTTACGGGGAGGGCTCCCTCGACGCAGTACCCTTCTCCAGCGCGTCCGCGCGTGGAGGAGCAAGCTGACGTGGATCTTCCGAAGTGGGTGAAGTCGGTGGTGAAAGAAGAGTGGACCTCGGAGGTGTTTGACCAGGAGCTGTTGAGGTACAAGAACATTGAGGATGAGTTGGTGGCCATGTTGCACGTGGGACTCGCGTGCGTGGCGGCGCAGCCCGAGAAGAGGCCAAGCATGTTGGATGTTGTTAAGATGATTGAGGATATCAGGGTGGAACAGTCGCCGCTCGGAGATGATTACGATGAGGCACGCTCACGCACTTCGCTTTCGCCTTCCCTTGCCACCACCGAAGACAACCTTGCTTAG 2037 0.5562 MKKVRLCPIILALALCLCILAPVAAGQNDTLALTEFRLQTDTHGNLLTNWTGGDACSAAWHGVECSPNGRVVGLTLPSLNLRGPIDSLSTLTYLRFLDLHENRLNGTVSPLLNCTSLELLYLSRNDFSGEIPPEISSLRLLLRLDISDNNIRGPIPTQLKKLTHLLTLRLQNNALSGHVPDLSASLQNLTELNVTNNELRGHVPDSMLTKFGNASFSGNHALCGSTPLPKCSETEPDTETTITVPAKPSSFPQTSSVTVTDTPKKKGLSAGVIVAIVVAVCVAVLVAMSFVVAHCCARGYTSGSVVGSESAKRKSGSSSGSEKKVYGNGGNFDRDRDSDGTNTETERSKLVFFDRRNQFELEDLLRASAEMLGKGCLGTVYRAVLDDGCTVAVKRLKDANPCERNEFEQYMDVVGKLKHPNIVRLRAYYYAKEEKLLVYDYLPNGSMHALLHGNRGPGRIPLDWTTRISLVLGAARGLARIHAEYNASKIPHGNVKSSNVLLDKNGVALIADFGLSLLLNPVHAIARLGGYRAPEQAEVKRLSQEADVYGFGVLLLEVLTGRAPSTQYPSPARPRVEEQADVDLPKWVKSVVKEEWTSEVFDQELLRYKNIEDELVAMLHVGLACVAAQPEKRPSMLDVVKMIEDIRVEQSPLGDDYDEARSRTSLSPSLATTEDNLA 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03130 678 Coils Coil 674 678 - -
Pumo5g03130 678 Gene3D Transferase(Phosphotransferase) domain 1 442 663 - -
Pumo5g03130 678 Pfam Protein kinase domain 370 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03130 678 Gene3D Ribonuclease Inhibitor 22 88 IPR032675 -
Pumo5g03130 678 Gene3D Ribonuclease Inhibitor 89 239 IPR032675 -
Pumo5g03130 678 ProSiteProfiles Protein kinase domain profile. 366 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03130 678 MobiDBLite consensus disorder prediction 231 263 - -
Pumo5g03130 678 MobiDBLite consensus disorder prediction 653 678 - -
Pumo5g03130 678 Gene3D Phosphorylase Kinase; domain 1 335 441 - -
Pumo5g03130 678 FunFam Nuclear pore complex protein NUP107 26 181 - -
Pumo5g03130 678 MobiDBLite consensus disorder prediction 303 325 - -
Pumo5g03130 678 MobiDBLite consensus disorder prediction 328 343 - -
Pumo5g03130 678 SUPERFAMILY L domain-like 28 208 - -
Pumo5g03130 678 MobiDBLite consensus disorder prediction 230 263 - -
Pumo5g03130 678 SUPERFAMILY Protein kinase-like (PK-like) 370 643 IPR011009 -
Pumo5g03130 678 FunFam pollen receptor-like kinase 1 336 441 - -
Pumo5g03130 678 CDD STKc_IRAK 372 646 - -
Pumo5g03130 678 MobiDBLite consensus disorder prediction 302 343 - -
Pumo5g03130 678 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 648 IPR046959 -
Pumo5g03130 678 MobiDBLite consensus disorder prediction 663 678 - -
Pumo5g03130 678 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03130 Pumo-Chr5 80062919 80065436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03130 23 674 Receptor kinase-like Gene Family AT2G36570 65.616 0.0 856
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Pumo5g03130 Pkinase 1.2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03130 - - gmx:100808402 1169.84