Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03128 ATGGAACCTAATGCACTAGGTGGTGGAATATTTCCTAACATAAGTAGTGGTTTACTAGGAGTAGGAGTAGAAAACCCTTTACAGCAACAACAACAACCAAACCTTCAAAACCAGCAAAACCCTCACGCTTTGCACCATCCCCAAATGGTTTCCTATGCTACACACCATGACACTGACACACATCATCATCAACAACAACCACCTCAGCAACCAATCAAACATGGCTACAACTTTTCAGCCACCAAATCCAACAAGTCACAAATCACACTCAGTGATGAAGATGAGCCTGTGTTCACAGCAGATGACAACAGCTCTGGGGACCCCAAGAGAAAAGTGTCACCATGGCATAGAATGAAGTGGACTGACACCATGGTAAGGCTCCTAATAATGGCGGTTTATTACATTGGAGACGAGGCTGGGTCAGAAGGCACTGATCCCACTAAGAAGAAAGCCGCGGGGTTGCTTCAAAAGAAAGGGAAATGGAAATCAGTGTCAAGGGGCATGATGGAGAAGGGATACTATGTGTCTCCTCAGCAATGTGAAGACAAGTTCAATGACTTGAACAAGAGGTACAAGAGGGTCAACGACATTCTAGGCAAGGGCACAGCATGTCGGGTGGTTGAGAACCAAACCTTGTTGGACACTATGGATCTGTCACCAAAGATGAAGGAAGAAGTTCGAAAACTGCTCAACTCCAAGCACTTGTTCTTCAGGGAAATGTGTGCTTACCACAACAGTTGTGGCCACAACAACAACAACTGTGGCAGTACTTCCAACGTGCAACAATCAACTGAGGCTCAACCACCACATCAACAGCAGCAGTGTTTGCACTCATCAGAAAATGGAGTGGGGAGTCTGAGAATGTTGAAAGAGGATGAGGATGAGGATATTGAGGATGATGAGTCGGAGGAGTTTTCTGATGAGGATGAAGAGGAATCAGGAGAAGGAGGATCAAGGGGTGTGGAGGAGGATGAAAATGATGTGATAAGGAAGAGAGCAAGGAAGGGAGGGTTTGGTGTTTCATCATCACAGATGATGCAGCAGTTGAGTGGTGAAGTGAGTGGTGTGTTGCAAGATGGAGGGAAGAGTGCATGGGAGAAAAAGCATTGGATGAAGAAGAGGGTGGTGCAGTTGGAGGAGCAGCAGGTGAGTTATCAAATGCAGGCGTTTGAGTTGGAAAAGCAGCGGTTGAAGTGGGCCAGGTTTAGCAGCAAGAAGGAGAGGGAAATGGAGAGAGATAAGCTTCAAAATGAAAGGAGGAGATTGGAGATAGAGAGAATGGTTTTGCTACTTCGCCAGAAGGAGCTTGAATTGGTTAATATTCAGCAGCAGCATCAACAGCAACATTCTTCTACCTAG 1359 0.4599 MEPNALGGGIFPNISSGLLGVGVENPLQQQQQPNLQNQQNPHALHHPQMVSYATHHDTDTHHHQQQPPQQPIKHGYNFSATKSNKSQITLSDEDEPVFTADDNSSGDPKRKVSPWHRMKWTDTMVRLLIMAVYYIGDEAGSEGTDPTKKKAAGLLQKKGKWKSVSRGMMEKGYYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQTLLDTMDLSPKMKEEVRKLLNSKHLFFREMCAYHNSCGHNNNNCGSTSNVQQSTEAQPPHQQQQCLHSSENGVGSLRMLKEDEDEDIEDDESEEFSDEDEEESGEGGSRGVEEDENDVIRKRARKGGFGVSSSQMMQQLSGEVSGVLQDGGKSAWEKKHWMKKRVVQLEEQQVSYQMQAFELEKQRLKWARFSSKKEREMERDKLQNERRRLEIERMVLLLRQKELELVNIQQQHQQQHSST 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03128 452 MobiDBLite consensus disorder prediction 257 281 - -
Pumo5g03128 452 MobiDBLite consensus disorder prediction 56 112 - -
Pumo5g03128 452 MobiDBLite consensus disorder prediction 292 318 - -
Pumo5g03128 452 MobiDBLite consensus disorder prediction 257 328 - -
Pumo5g03128 452 MobiDBLite consensus disorder prediction 64 93 - -
Pumo5g03128 452 Coils Coil 375 395 - -
Pumo5g03128 452 Gene3D - 120 193 - -
Pumo5g03128 452 Pfam Myb/SANT-like DNA-binding domain 117 242 IPR044822 -
Pumo5g03128 452 PANTHER F16F4.11 PROTEIN-RELATED 1 443 - -
Pumo5g03128 452 Coils Coil 405 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03128 Pumo-Chr5 80045618 80047231 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pumo5g03128 Myb_DNA-bind_4 8.7e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03128 - - gmx:547619 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03128 5 80045618 80047231 Pumo5g03128 5 80045618 80047231 ECH
Pumo5g03128 5 80045618 80047231 Pumo3g03156 3 58060007 58061808 PCT