Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03126 ATGGAGTTGAAAGCAAGAGATCTAGACAGGAAAGTGGAACCAGATATGGATAATTGGCATCACACCACAAAGCCATTTGTTCCTCGGCCAGAGACCTTAAGCTTCTTCTACAACTATAACAACAACAACAACCCATATCCAGGAGTGGAAGTGAAACAACTGACATTGAGGGAGACAGGAGAAGGGTCGGTTCCGGCAATGGACAACGGAAACAAAGAGAAGAAGAAGCGATTAACAAATAACCAGATAGAGTTATTGGAGAGGAGTTTTCAGGAGGAGATAAAGTTGGACCCTGAAAGGAAGATGAAGCTTTCTCGGGAGCTAGGGCTGCAGCCTCGCCAAATCGCTGTTTGGTTCCAAAATAGACGAACAAGGTGGAAGGCCAAGCAGCTTGAGCACTTGTACGATGCACTTAAACACCAATATGATGTCATCTCCAACGAAAAGCAGAAGCTTCAAGAAGAGGTTATGAAGTTGAAGGCAATGCTAAGTAAAGAGCAAGGAGGATTTGGGACGCAAACATTTGGCGGTTATACAGAAATATCTGGGGAAGAAACAGTGGAAAGCACGTCAGAGGGTCTAAGGGGTTCCAACAAGCAGGCACGGGGAAAGCGTAACATCGAGCAGGTTGCAGATCAAGGCTACTGTTCTTTCACTGTGGACGATTATAACACAGTTTCACTGCCTCATTGCCACTGGCCTGTTGTGCCTTATTAG 717 0.4561 MELKARDLDRKVEPDMDNWHHTTKPFVPRPETLSFFYNYNNNNNPYPGVEVKQLTLRETGEGSVPAMDNGNKEKKKRLTNNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYDALKHQYDVISNEKQKLQEEVMKLKAMLSKEQGGFGTQTFGGYTEISGEETVESTSEGLRGSNKQARGKRNIEQVADQGYCSFTVDDYNTVSLPHCHWPVVPY 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03126 238 Coils Coil 128 162 - -
Pumo5g03126 238 ProSiteProfiles 'Homeobox' domain profile. 69 129 IPR001356 GO:0003677
Pumo5g03126 238 MobiDBLite consensus disorder prediction 186 205 - -
Pumo5g03126 238 CDD homeodomain 72 130 IPR001356 GO:0003677
Pumo5g03126 238 SMART HOX_1 71 133 IPR001356 GO:0003677
Pumo5g03126 238 ProSitePatterns 'Homeobox' domain signature. 104 127 IPR017970 GO:0000981|GO:0006355
Pumo5g03126 238 Pfam Homeodomain 72 127 IPR001356 GO:0003677
Pumo5g03126 238 FunFam Putative homeobox-leucine zipper protein ATHB-51 71 134 - -
Pumo5g03126 238 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 68 188 IPR045224 GO:0003700
Pumo5g03126 238 Pfam Homeobox associated leucine zipper 129 163 IPR003106 GO:0006355|GO:0043565
Pumo5g03126 238 Gene3D - 66 136 - -
Pumo5g03126 238 PRINTS Lambda-repressor HTH signature 100 109 IPR000047 GO:0003677
Pumo5g03126 238 PRINTS Lambda-repressor HTH signature 109 125 IPR000047 GO:0003677
Pumo5g03126 238 SUPERFAMILY Homeodomain-like 64 133 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03126 Pumo-Chr5 80023411 80025362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03126 16 175 Homeobox Transcription Factor Family AT2G36610 43.333 6.43e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo5g03126 Homeodomain 3.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03126 - - gmx:100806798 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03126 5 80023411 80025362 Pumo5g03126 5 80023411 80025362 ECH
Pumo3g03158 3 58129971 58131961 Pumo5g03126 5 80023411 80025362 PCT