Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03118 ATGTTTCTTCCCCTAATTGTCCATGCAGAAATGATTGCTGAATCAAACATGAGACCCAGCTTCCATTTTTGCTATGCCTTTCTTCTTTTCCTTGTCCTTGGCCACCACACTTGTTCACAGAAGACTTGTCCAAACTGTGGCTCTATGCAAGTTCCATACCCTTTGAGCACAGATCCAAGTTGCGGTGATCCATACTACAAGCTTCGTTGTGATCCCCACTCTCAAAGGCTTTTCTTCGACACCCTCAATGGAAGTTCCTATCTCGTTCTCAGAATCATGTCTTCAATCCAACGCATGGTGGTAGAGCCATCACCTTGGTTACCAGGTTCTTGTGTCACACAAGACATGCCAAGAAGCAATGGTATATGGTTAAACCAGTCACTCCCTTTCAACATAACTTCATCCAACACAGTGTTCCTCTTTAACTGTTCCCCTCGCCTCTTGGTTTCTCCACTTAACTGCACTTCTTCTAGTATTTGCCATCGTTTCTTGGAGAGTTCAGGCCATGTTGACACAAAACGAGCACTTGAGTGTGCAAGTGGTCTTCACCCTTGTTGCACTTTTCTAGCTGGTGGGATACCTTCAGCTTACAGGATCAGGCTTCATGATTCTGGTTGCAAAGCATTCAGAAGCATCCTTCATTTGAACCAAGACAGGCCTCCTAATCAGTGGGAGGAGGGTCTTGAAATTCAATGGGCTCCTCCACCTGAACCAGTGTGCAAGACACAAAGGGATTGCTCTGAAGACTCTAAGTGTTCCCCTTCTGGTAAAAATGGCCTATTTCGCTGTCTTTGTAATGGGGGACACATTTGGAACCCTTTTGAAGCAACCTGTGTGAGGTATCAGAGAAAATCCAAATGGAAAACCAGCTTGGTGGTCTCAATAGGGGTTGTTCTTACTTTTTTCTCCCTTGCTGTGGTTCTGACCATCATCACAAAGTCCTTCAAACTCTCTCCCTATAAAGAGAATCAGGCCAAGGAAAGAGAAGATAAGCTGAAATCAAGTGCTGGGGAGAAGCCTTGTAGGATGTTTCAACTGAAAGAGGTGAAGAAAGCAACAAACGGTTTTTCCCATGAGAAGTTCTTGGGGAGTGGTGGCTTTGGGGAAGTTTTCAAAGGTGAATTACAAGATGGAACATTGGTGGCTGTGAAGAAAGCTAGAGTGGGAAACCTGAAAAGCACCCAACAAGTGCTTAATGAGGTTGCAATACTTTCTCAAGTGAATCACAAGAACCTGGTCAGGCTCTTGGGTTGCTGTGTGGAATCTGAGCTACCATTGATGATCTATGAGTATATCTCAAATGGGACCCTCTATGACCATCTTCATGGTAGGTATTGTTCCAACTTTCTAGATTGGAAAACAAGGCTGAAAGTTGCTTTTCAAACTGCAGAAGCATTGGCCTACTTGCATTCTGCTGCACACACTCCCATCTACCACAGAGATGTTAAGTCAACAAATATATTATTGGATGATGAATTCAATGCCAAGGTCTCAGATTTTGGACTCTCCAGATTGGCTAGCCCGGGACTTAGTCATGTGTCAACATGTGCTCAGGGAACGTTGGGGTACTTGGATCCTGAATACTACCGCAACTACCAGTTAACAGATAAAAGTGATGTTTATAGTTATGGGGTTGTGTTGTTAGAGCTTTTGACATCACAGAAAGCGATTGACTTCAATCGTGATCAAGATGATGTCAACCTAGCAATTCATGTGAATCAACATGCGAGCAATGGTACAATCATGGAAGTGGTGGATCAAAGGCTTCTTTCCGTGGAGACCTTGAAGGATAAAATGTTCACAAGCATAAAACTCTTCTTGGAGCTTGCACTTGAATGTCTAAGGGAGAAGAAAAGTGAAAGGCCTAATATGAGGGATATTGTTCAACGCCTACTATGCATAATTAAGATTGTAGAACAAGAGTGA 1926 0.4346 MFLPLIVHAEMIAESNMRPSFHFCYAFLLFLVLGHHTCSQKTCPNCGSMQVPYPLSTDPSCGDPYYKLRCDPHSQRLFFDTLNGSSYLVLRIMSSIQRMVVEPSPWLPGSCVTQDMPRSNGIWLNQSLPFNITSSNTVFLFNCSPRLLVSPLNCTSSSICHRFLESSGHVDTKRALECASGLHPCCTFLAGGIPSAYRIRLHDSGCKAFRSILHLNQDRPPNQWEEGLEIQWAPPPEPVCKTQRDCSEDSKCSPSGKNGLFRCLCNGGHIWNPFEATCVRYQRKSKWKTSLVVSIGVVLTFFSLAVVLTIITKSFKLSPYKENQAKEREDKLKSSAGEKPCRMFQLKEVKKATNGFSHEKFLGSGGFGEVFKGELQDGTLVAVKKARVGNLKSTQQVLNEVAILSQVNHKNLVRLLGCCVESELPLMIYEYISNGTLYDHLHGRYCSNFLDWKTRLKVAFQTAEALAYLHSAAHTPIYHRDVKSTNILLDDEFNAKVSDFGLSRLASPGLSHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSYGVVLLELLTSQKAIDFNRDQDDVNLAIHVNQHASNGTIMEVVDQRLLSVETLKDKMFTSIKLFLELALECLREKKSERPNMRDIVQRLLCIIKIVEQE 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03118 641 ProSiteProfiles Protein kinase domain profile. 356 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03118 641 Gene3D Transferase(Phosphotransferase) domain 1 432 640 - -
Pumo5g03118 641 CDD STKc_IRAK 362 631 - -
Pumo5g03118 641 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 23 634 IPR044652 GO:0004672
Pumo5g03118 641 ProSitePatterns Protein kinases ATP-binding region signature. 362 385 IPR017441 GO:0005524
Pumo5g03118 641 SUPERFAMILY Protein kinase-like (PK-like) 334 631 IPR011009 -
Pumo5g03118 641 Gene3D Phosphorylase Kinase; domain 1 317 431 - -
Pumo5g03118 641 FunFam Wall-associated receptor kinase-like 20 432 641 - -
Pumo5g03118 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672|GO:0006468
Pumo5g03118 641 Pfam Wall-associated receptor kinase galacturonan-binding 43 100 IPR025287 GO:0030247
Pumo5g03118 641 FunFam Wall-associated receptor kinase-like 20 318 431 - -
Pumo5g03118 641 SMART serkin_6 356 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03118 641 Pfam Protein kinase domain 357 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03118 Pumo-Chr5 79954714 79956877 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03118 25 641 Receptor kinase-like Gene Family AT5G02070 45.303 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Pumo5g03118 Pkinase 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03118 - - gmx:100804678 1253.43