Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03116 ATGGCGGTTCCTCCGTCGGTCGCCGCCGCTCCGGCCTCGCTCTACGTCGGCGACCTCCACCCCGACGTCTCCGACAGTCACCTCGTCGACGCATTCTCCGAGTTCAAGAGCCTCGCGTCCGTTCGCGTCTGCAAAGACTCCTCCACCGGCAAATCCCTCTGTTACGGCTACGTCAACTTCGTTTCCCCTCAAGACGCAATTCGTGCAATCGAGCTGAAAAATAATTTCACGCTGAATGGGAAAGCGATGAGGGTGATGTGGTCGCGTCGTGATCCTGATGCGAGGAAAAACGCCATAGGGAACTTGTTTGTTAAGAACTTGCCTGAATTGATAGATAATGCGGGACTGCAAGATATGTTCAAAAAATATGGGAATATTCTGTCCAGCAAAGTTGTCATGTCTGAGGATGGGAAGAGCAAAGGATACGGGTTTGTTCAATTTGAATCAGAAGAATCTTCAAATGTTGCTATCGAGAAGCTGAATGGCTCTACTGTTGGTGATAAGCAGTTATATGTTGGGAAGTTTGTCAAAAAAAGTGATCGAATTTTGCCTGGCCCTGATGCTAGATATACTAATTTGTACATGAAGAATTTGGACCCAGATATTACAGAAGCAACACTGCAGGAGAAGTTTTCCTCTTTTGGAAAAATTGTTAGCTTGGCTATTGCAAAGGACAACAATGGGATGTCCAAGGGTTTTGGCTTTGTGAACTATGATAACCCAGATGATGCTAAAAAGGCAATGGAAGCAATGAATGGATCACAACTAGGTTCTAAGATTCTGTATGTAGCCAGAGCACAAAAGAAGGCTGAGCGTGAGCAGATCTTGCACCACCAATTTGAGGAGAAACGGAAGGAACAAATCTTGAAATACAAAGGATCAAACATTTATGTGAAAAACATTGATGACAACGTAAATGATGAAGAACTGAGGGATCATTTTAGTGCATGTGGCACTATAACTTCTGCAAAAGTTATGCGAGATGACAAAGGGATAAGTAAAGGGTTTGGCTTTGTCTGCTTCTCCACTCCTGAGGAGGCCAATAAAGCTGTGAACACTTTTCATGGATTCATGTTTCATGGTAAACCACTATATGTTGCTCTTGCTCAGAGGAAAGAGGATAGGAAAGCACAATTGCAGCTCCAGTACGCACAGCAAATGGCAGGACTAGCTGGACCTTCAACTGCCATTATCCCTGGTGGATATCCTCCTTACTACTATGCAGCTACTGGCGTTATTTCACACGTGCCTCCTCGAGCTGGGCTGATGTATCAACATCTGGCATTGAGGCCAGGATGGGGGGCTAATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAGATTGAATGGGAATTCTATAGCACAGGGAAATACTCAGTCTGGTACTTATTTACCACAAGCCCAGCAGATTTCTCAGCCAGTGATCTCTTCAAGAGAGTCAAGTACTCAGCAGAGAACTGGACAGGCTAAGTACATACCTAGTGGACGCCAGCGTGACATGGAAAAAGGATCCGGATCCTCATCTGGTGGTTCAAACTCTGGCAGAGGGTCCCAGGGGTCAGAAATGCTGCATAGCATGCTTGCTGGTGCTGCTCCTGAGCAGCAGAAAGAGATACTCGGGGAGCATCTTTACATGCTTGTTCAGAAACTAAAGCCTACCCTAGCAGCAAAAATTACAGGGATGCTTTTGGAGATGGACAATGGAGAATTGCTGGTTCTACTGGAATCGCCAGAGTCTCTTTCTGCCAAGGTGGAAGAAGCTGTCCAAGTGCTTAAGAACTCTAAGACCAAAGTTTCTGGCCAGGACGTACTTCATTCAAATTTCCTTTCAGCCGAGGTTGCAGTTAACTGA 1908 0.4591 MAVPPSVAAAPASLYVGDLHPDVSDSHLVDAFSEFKSLASVRVCKDSSTGKSLCYGYVNFVSPQDAIRAIELKNNFTLNGKAMRVMWSRRDPDARKNAIGNLFVKNLPELIDNAGLQDMFKKYGNILSSKVVMSEDGKSKGYGFVQFESEESSNVAIEKLNGSTVGDKQLYVGKFVKKSDRILPGPDARYTNLYMKNLDPDITEATLQEKFSSFGKIVSLAIAKDNNGMSKGFGFVNYDNPDDAKKAMEAMNGSQLGSKILYVARAQKKAEREQILHHQFEEKRKEQILKYKGSNIYVKNIDDNVNDEELRDHFSACGTITSAKVMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRKAQLQLQYAQQMAGLAGPSTAIIPGGYPPYYYAATGVISHVPPRAGLMYQHLALRPGWGANGFAPPARSFQQSPVPAVSNNTRQHRQNRGRLNGNSIAQGNTQSGTYLPQAQQISQPVISSRESSTQQRTGQAKYIPSGRQRDMEKGSGSSSGGSNSGRGSQGSEMLHSMLAGAAPEQQKEILGEHLYMLVQKLKPTLAAKITGMLLEMDNGELLVLLESPESLSAKVEEAVQVLKNSKTKVSGQDVLHSNFLSAEVAVN 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03116 635 Gene3D - 536 628 - -
Pumo5g03116 635 CDD RRM2_I_PABPs 99 174 IPR045305 -
Pumo5g03116 635 PANTHER RNA BINDING PROTEIN 12 74 - -
Pumo5g03116 635 Coils Coil 263 283 - -
Pumo5g03116 635 SUPERFAMILY RNA-binding domain, RBD 13 179 IPR035979 GO:0003676
Pumo5g03116 635 Gene3D - 279 382 IPR012677 -
Pumo5g03116 635 Gene3D - 184 278 IPR012677 -
Pumo5g03116 635 CDD RRM4_I_PABPs 293 371 - -
Pumo5g03116 635 FunFam Polyadenylate-binding protein 277 385 - -
Pumo5g03116 635 FunFam Polyadenylate-binding protein 4 99 - -
Pumo5g03116 635 Gene3D - 100 183 IPR012677 -
Pumo5g03116 635 SMART rrm1_1 101 173 IPR000504 GO:0003723
Pumo5g03116 635 SMART rrm1_1 13 86 IPR000504 GO:0003723
Pumo5g03116 635 SMART rrm1_1 192 264 IPR000504 GO:0003723
Pumo5g03116 635 SMART rrm1_1 295 367 IPR000504 GO:0003723
Pumo5g03116 635 FunFam Polyadenylate-binding protein 182 276 - -
Pumo5g03116 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Pumo5g03116 635 MobiDBLite consensus disorder prediction 440 539 - -
Pumo5g03116 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Pumo5g03116 635 MobiDBLite consensus disorder prediction 441 510 - -
Pumo5g03116 635 SUPERFAMILY RNA-binding domain, RBD 291 386 IPR035979 GO:0003676
Pumo5g03116 635 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 611 IPR006515 GO:0003723
Pumo5g03116 635 Gene3D - 3 99 IPR012677 -
Pumo5g03116 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Pumo5g03116 635 Pfam Poly-adenylate binding protein, unique domain 546 610 IPR002004 GO:0003723
Pumo5g03116 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Pumo5g03116 635 FunFam Polyadenylate-binding protein 101 181 - -
Pumo5g03116 635 SUPERFAMILY PABC (PABP) domain 542 621 IPR036053 GO:0003723
Pumo5g03116 635 SUPERFAMILY RNA-binding domain, RBD 184 275 IPR035979 GO:0003676
Pumo5g03116 635 SMART rrm2_1 192 264 IPR003954 GO:0003676
Pumo5g03116 635 SMART rrm2_1 13 86 IPR003954 GO:0003676
Pumo5g03116 635 SMART rrm2_1 101 173 IPR003954 GO:0003676
Pumo5g03116 635 SMART rrm2_1 295 367 IPR003954 GO:0003676
Pumo5g03116 635 MobiDBLite consensus disorder prediction 519 539 - -
Pumo5g03116 635 FunFam Polyadenylate-binding protein 536 622 - -
Pumo5g03116 635 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 538 615 IPR002004 GO:0003723
Pumo5g03116 635 SMART poly_2 550 613 IPR002004 GO:0003723
Pumo5g03116 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 83 IPR000504 GO:0003723
Pumo5g03116 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 260 IPR000504 GO:0003723
Pumo5g03116 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Pumo5g03116 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03116 Pumo-Chr5 79936692 79941534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03116 12 633 Eukaryotic Initiation Factors Gene Family AT2G36660 54.054 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03116 K13126 - gmx:100779547 1153.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03116 5 79936692 79941534 Pumo5g03116 5 79936692 79941534 ECH