Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03108 ATGGACGCCGTGAAGCCGGAACCGGAATCCGCGACCGTTTCGACGGATCAGCCTAGGAAAGTTTCCGTGGTGAATGGTTACATTGTTTACACTCGCGCCAAGAGGTCTCTCGATTCGTGTAATTCTGAACACGTGGAATTGAAAGCGAGTGCGGAGATTTCAGTAAAAACGGAGAACGGAGAGTGTGAGAAGCAGCTGAAGAATGAGTCCATAGAGGTGGCGGTGAGGACGCGCAAGCGGTACCGGCGATCGGCGTTGGAAGCTAAGGTTGAGTGTTGTGATCAGACGGTGGTGAATGAGTCGGAACAAGTTGCGAATGGTGGAATCAACGGTGCATTGGGAGCGCCGAGGAACAAGTTGGAGTTGAAGATGTCGAAGAAGATTGTGGTCAACAGGAAGCCTATGACTGTGAAAGAGCTCTTCGATACTGGTTTTCTTGATGGCGTCTCGGTGGTTTACATGGGCGGCATTAAGAAGGCTTCGGGATTACGAGGTGTGATTAGAGATGGGGGAATATTGTGCTCGTGCTGTCTGTGCAATGGACGCAGGGTTATTCCACCTTCCCAATTCGAGATCCATGCTTGCAAACAATATAGGAGAGCTGCGCAGTATATTTGCCTCGAAAATGGGAAGAGCCTGCTTGATCTGTTGAGAGCATGCAGGGGAGCTACCCTGCATACTTTGGAGGTGACAGTTCAAAATTTTGTTTGTTCTCCACCTGAAGAAAGATATTTTACTTGTAAAAGGTGCAAAGGATGTTTCCCTTCTTCATTTGTGGAAGGAGTGGGGCCTATATGCCGTTCTTGTGTGGAATCAAGGAAGTCTGAAGAAAGTTCAAATAACGTAGTTGGCAAAAGAGTTAGGTCCCCTAGACCAGTGTTGCTCTCCAACCCATTCAGTACGTCTGAGCTGTCTGTCTCTTCACAAATTAAGAGACACAGGAAGAAAAGAACAAAGTCATCAAAAAGGATTATCCGTTCAAATGCTTCCAAGAATGCTTCTGTGGCTGTTCTACCCCGGAAGAAAATTTTGTTGAAGATGAAAAAGAAGTCACTGTCGGTAAAGTTGAAGTCCCCCGAAAAAACTTCAAATTCGAAATCTAATAAGAGTCAATGGAGGATAACTAAGAAGGATCAGCGATTGCATAAGTTAGTTTTTGAAGAAAATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCACGTGGACAGAAATTGCTTGAAGGTTTCAAGATGGGCTCTGGCATTGTTTGTCGATGCTGCAACACTGAGGTGTTGCTCGTTACATTTGTATATTTGCTGGGCTTCTCGCAAGAAACCGTGAGTCTTTTTCTTCCTTGGGAGTTGGTGGGAGGGATATTAAACTGCTTTTTGATTATGGATATAGGTTTTAATGGAAGTGCAATAATGTTGGGCAGTTATGCATACATTTACACATCAAATGGGGTGTCTCTCCATGAATTAGCAATATCTCTCTCAAAAGATCGAAAATACTCTGCGAAGGACAATGATGATCTATGCATTGTTTGTTGGGATGGTGGTAATCTGTTGCTTTGCGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCAGCTCTATCTAGTATTCCGCGTGGTGACTGGTACTGTCAATTTTGCCAAAACATGTTCCAGAGAGAAAAGTTTGTGGCGCACAATGCCAATGCTGTGGCAGCTGGAAGGATTGAAGGAGTTGATCCTATTGAACAGATTACCAATAGATGCATTCGCATAGTCAAAGACATTGAAGCTGAGCTTAGTGCATGTGCTTTATGCAGGGGTGTTGATTTCAGCAGATCTGGCTTTGGTCCACGCACAATAATACTCTGCGACCAGTGTGAAAAGGAATATCATGTTGGCTGTTTGAGGGATCACAAGATGGCATATTTAAAGGAATTGCCAGAAGGTAATTGGCTTTGTTGCAATGATTGTACAAGAATACATTCTACTTTGGAGAACCTTTTGGTTAGGGGGGCTGAGAGACTCCCTGAATCTCTCTTGGGTGTTATAAAGAAGAAGCAAGAGGAAAAAGGATTAGAACCCATCAATGATATTGATGTAAGATGGAGGCTTCTTAATGGCAAAATTGCTTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTGTTTCAATCTTTCATGAATGCTTTAATCCTATAGTTGATGCAGCTAGTGGACGTGACCTTATTCCAGCCATGGTTTATGGGAGGAATGTGCGGGGTCAGGAGTTTGGAGGAATGTATTGTGCATTACTAATTGTCAATTCATCTGTGGTATCTGCGGGCATGCTTCGAATTTTTGGCTCAGATATCGCTGAACTCCCTTTAGTTGCAACAAGTAACGGGAACCATGGAAAGGGCTACTTCCAAACACTCTTCTCCTGCATCGAGAGGCTGCTGGCTTTCTTGAATGTGAAGAACCTTGTGCTGCCAGCTGCAGAAGAAGCAGAATCAATATGGACGGATAAATTTGGGTTTAGCAAGATGAATCCAGATCAGCTTACCAACTATAGAAAGAACTGCCATCAGATGGTAAGTTTCAAAGGGACAAATATGCTGCATAAAATGGTGCCTTCGTGTCGGGTCATCAATAATCAATCATGA 2619 0.4383 MDAVKPEPESATVSTDQPRKVSVVNGYIVYTRAKRSLDSCNSEHVELKASAEISVKTENGECEKQLKNESIEVAVRTRKRYRRSALEAKVECCDQTVVNESEQVANGGINGALGAPRNKLELKMSKKIVVNRKPMTVKELFDTGFLDGVSVVYMGGIKKASGLRGVIRDGGILCSCCLCNGRRVIPPSQFEIHACKQYRRAAQYICLENGKSLLDLLRACRGATLHTLEVTVQNFVCSPPEERYFTCKRCKGCFPSSFVEGVGPICRSCVESRKSEESSNNVVGKRVRSPRPVLLSNPFSTSELSVSSQIKRHRKKRTKSSKRIIRSNASKNASVAVLPRKKILLKMKKKSLSVKLKSPEKTSNSKSNKSQWRITKKDQRLHKLVFEENGLPDGTEVAYYARGQKLLEGFKMGSGIVCRCCNTEVLLVTFVYLLGFSQETVSLFLPWELVGGILNCFLIMDIGFNGSAIMLGSYAYIYTSNGVSLHELAISLSKDRKYSAKDNDDLCIVCWDGGNLLLCDGCPRAFHKECAALSSIPRGDWYCQFCQNMFQREKFVAHNANAVAAGRIEGVDPIEQITNRCIRIVKDIEAELSACALCRGVDFSRSGFGPRTIILCDQCEKEYHVGCLRDHKMAYLKELPEGNWLCCNDCTRIHSTLENLLVRGAERLPESLLGVIKKKQEEKGLEPINDIDVRWRLLNGKIASPETRPLLLEAVSIFHECFNPIVDAASGRDLIPAMVYGRNVRGQEFGGMYCALLIVNSSVVSAGMLRIFGSDIAELPLVATSNGNHGKGYFQTLFSCIERLLAFLNVKNLVLPAAEEAESIWTDKFGFSKMNPDQLTNYRKNCHQMVSFKGTNMLHKMVPSCRVINNQS 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03108 872 CDD PHD1_AIRE 506 546 - -
Pumo5g03108 872 SMART PHD_3 506 547 IPR001965 -
Pumo5g03108 872 SMART PHD_3 594 651 IPR001965 -
Pumo5g03108 872 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 590 653 IPR013083 -
Pumo5g03108 872 ProSitePatterns Zinc finger PHD-type signature. 507 546 IPR019786 -
Pumo5g03108 872 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 493 570 - -
Pumo5g03108 872 ProSiteProfiles Zinc finger PHD-type profile. 504 549 IPR019787 -
Pumo5g03108 872 PANTHER AUTOIMMUNE REGULATOR 45 861 - -
Pumo5g03108 872 SUPERFAMILY FYVE/PHD zinc finger 585 648 IPR011011 -
Pumo5g03108 872 Pfam PHD-finger 507 548 IPR019787 -
Pumo5g03108 872 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 591 653 - -
Pumo5g03108 872 Pfam Tify domain binding domain 165 220 IPR032308 -
Pumo5g03108 872 SUPERFAMILY FYVE/PHD zinc finger 493 551 IPR011011 -
Pumo5g03108 872 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 492 581 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03108 Pumo-Chr5 79836810 79845519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03108 126 869 PHD Transcription Factor Family AT2G36720 51.507 0.0 775
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo5g03108 TDBD 1.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03108 - - gmx:100802562 1516.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03108 5 79836810 79845519 Pumo3g03187 3 58501918 58513378 PCT
Pumo3g02089 3 32603027 32606429 Pumo5g03108 5 79836810 79845519 PCT