Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03107 ATGGGATTCAACAGAACCCACTTTTGGCTTTCTGGCTTTGTCATTTTTCTCTTTTCTATCATATTTGTTCTTTATGCCATGCCACCTTCCCCCACCGCTAACACTGCCATTAGTGATCCTCAAGATAGTTTCAGTTTCCAGCTTGGTATATTTAGTAAGATTATAAAGCTTAGTGGCGCTCATGACTTTGTGTCTCTGATAACAAGTATAGCTAGGAGGAGACATCATCATCACCGGAGGAGACATAAGGGAAAATGTGACGGGTCCAAATGGGATTCCAAGCTTATTCAAGACTATAACGTGAGTCTTGTTCTCACGGTTGACTTAAAGGGCTGTGCTAACTTCAGTAGCGTGCAGAAAGCTGTTGATGCTGTTCCTGAATCTAGCTCTGATACCACCCTTATCATAATCGATTCTGGCACATACAGGGAGAAGGTAGTGGTGCAGGCCAACAAAACAAACTTGATAGTTCAAGGTCAAGGGTATTTGAATACAATCATAGAATGGAACGACACCGCAAATGCCACCGGCGGGACTTCCTATAGCTACTCGTTTGGCATCTTTGCTTCTAAGTTCACTGCTTACAACATCAGCTTTAAGAACACGGCTCCTCCACCGTCACCAGGAGTGGTTGGGGCACAAGCGGTGGCACTGAGGGTTACCGGTGATCAAGTTGCTTTCTATGGGTGTGGGTTTTATGGTGCGCAAGACACACTCAATGATGATGCTGGAAGACATTATTTTAAAGAATGCTTCATCCAAGGATCCATTGATTTCATATTTGGAAATGCTAGATCACTTTATGAGGATTGTACCATAAACTGTATAGCAAAAGAAGAGAAGGAAGGGATTAGCGGGTCGATCACCGCTCAAGGTAGGCAATCGATGAATGAGGAAAGTGGGTTTTCGTTTGTGAATTGTAGCATTGTTGGGAGTGGGAGAGTGTGGCTTGGAAGAGCTTGGGGAGCCTATGCTACTGTGGTCTTCTCAACAACATACATGTCTGATGTCGTTGCTCCTGATGGATGGAATGATTGGAGAGATCCCTCTAGAGATCAGACCGTCTTCTTTGGGGAGTACCGTTGTCTTGGACCTGGAGCAAATTATACCTCCAGAGTCTCTTATGCGAAGCAACTCCGGGATTACGAAGCAAACTCCTACATGAATATTTCGTACATTGATGGAACTGATTGGCTTCTTAATTGTTTTCAAAACTATGTTAACCCTTCATATATCTAA 1239 0.4366 MGFNRTHFWLSGFVIFLFSIIFVLYAMPPSPTANTAISDPQDSFSFQLGIFSKIIKLSGAHDFVSLITSIARRRHHHHRRRHKGKCDGSKWDSKLIQDYNVSLVLTVDLKGCANFSSVQKAVDAVPESSSDTTLIIIDSGTYREKVVVQANKTNLIVQGQGYLNTIIEWNDTANATGGTSYSYSFGIFASKFTAYNISFKNTAPPPSPGVVGAQAVALRVTGDQVAFYGCGFYGAQDTLNDDAGRHYFKECFIQGSIDFIFGNARSLYEDCTINCIAKEEKEGISGSITAQGRQSMNEESGFSFVNCSIVGSGRVWLGRAWGAYATVVFSTTYMSDVVAPDGWNDWRDPSRDQTVFFGEYRCLGPGANYTSRVSYAKQLRDYEANSYMNISYIDGTDWLLNCFQNYVNPSYI 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03107 412 SUPERFAMILY Pectin lyase-like 102 399 IPR011050 -
Pumo5g03107 412 FunFam Pectinesterase 99 404 - -
Pumo5g03107 412 ProSitePatterns Pectinesterase signature 2. 253 262 IPR033131 -
Pumo5g03107 412 Gene3D - 99 407 IPR012334 -
Pumo5g03107 412 Pfam Pectinesterase 106 395 IPR000070 GO:0030599|GO:0042545
Pumo5g03107 412 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 93 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03107 Pumo-Chr5 79831692 79835155 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03107 98 399 Carbohydrate Esterase AT1G05310 55.410 2.77e-120 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03107 - - gmx:100802034 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03107 5 79831692 79835155 Pumo3g02145 3 33182164 33187751 PCT