Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03097 ATGCAAAAGCAAGAGGAATTACACGCGGTGTGCAAGGATCACATGCAAATCATCAAGGGCAAGCGCACAAAGCGTCAAAGGCTTCCATCCCCACTTAGGTTAACCATGTCAACAACATGTTCCAGTTTAGGAAGAAGCAGCACCGACAATTCCGTAGGTTTTGATCATCTTCCAACAACCTCAAATGAATCAAGGAACGAAGAGGAAGACATGGCAAATTGTTTGATTCTCTTAGCTCAAGGTCACAACACCCCAAAACCCTCCTCACACAACAATAACAACAAGGGAGGGTTATGCCTTTACGAGTGCAAGACTTGTAACCGATGCTTCCCTTCATTTCAAGCCCTTGGTGGCCACAGAGCAAGCCACAAGAAATATTCCAAGGCAAGTACAGAAGAAAAGCAAGGAGTTGCAACAACTACTTTTGTGAATGAAGTGGATAATAATCATCATAATCATGGTGATTATTGTGACCCCACAAGTACCACCCTCACCTTACAATTATCAACGACTTTGTATAATAATAGCAGCAGCAGCAGCAGCAGAACTAGGAGTACTACTATTAATGCTAAATCTAAAGTTCATGAGTGTTCCATATGTGGGGCAGAATTTTCATCTGGGCAAGCCTTGGGGGGACACATGAGAAGGCATAGAAATTTTCTGAGTGCACCTACGAGTGGGGCAATTAATGCAAATGGTGGTGATGGAAGAAGCCCTGAATTTCCGGAAACCAAGAAACACAAAGATGTTTTGAACTTGGACTTGAATCTTCCGGCACCTGAGGATGATCATCATAGAGAATCCAAGTTGTTTCCTTTTCAGGCCAAAGAAAAAGTTATTGTCTTCTCACCAACTTCTTTGGTGGATTGCCATTACTAA 879 0.4266 MQKQEELHAVCKDHMQIIKGKRTKRQRLPSPLRLTMSTTCSSLGRSSTDNSVGFDHLPTTSNESRNEEEDMANCLILLAQGHNTPKPSSHNNNNKGGLCLYECKTCNRCFPSFQALGGHRASHKKYSKASTEEKQGVATTTFVNEVDNNHHNHGDYCDPTSTTLTLQLSTTLYNNSSSSSSRTRSTTINAKSKVHECSICGAEFSSGQALGGHMRRHRNFLSAPTSGAINANGGDGRSPEFPETKKHKDVLNLDLNLPAPEDDHHRESKLFPFQAKEKVIVFSPTSLVDCHY 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03097 292 ProSitePatterns Zinc finger C2H2 type domain signature. 197 217 IPR013087 -
Pumo5g03097 292 PANTHER ZINC FINGER PROTEIN ZAT5 60 270 - -
Pumo5g03097 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Pumo5g03097 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 195 217 IPR013087 -
Pumo5g03097 292 SMART c2h2final6 195 217 IPR013087 -
Pumo5g03097 292 SMART c2h2final6 101 123 IPR013087 -
Pumo5g03097 292 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Pumo5g03097 292 MobiDBLite consensus disorder prediction 224 244 - -
Pumo5g03097 292 Gene3D Classic Zinc Finger 98 217 - -
Pumo5g03097 292 MobiDBLite consensus disorder prediction 37 60 - -
Pumo5g03097 292 MobiDBLite consensus disorder prediction 37 66 - -
Pumo5g03097 292 SUPERFAMILY beta-beta-alpha zinc fingers 101 217 IPR036236 -
Pumo5g03097 292 Pfam C2H2-type zinc finger 101 125 - -
Pumo5g03097 292 Pfam C2H2-type zinc finger 194 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03097 Pumo-Chr5 79480984 79482126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03097 1 292 C2H2 Transcription Factor Family AT2G28200 42.006 5.13e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo5g03097 zf-C2H2_6 1.4e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03097 - - gmx:100775268 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03097 5 79480984 79482126 Pumo5g03097 5 79480984 79482126 ECH
Pumo3g03217 3 59431306 59432332 Pumo5g03097 5 79480984 79482126 ECH
Pumo4g03825 4 78471693 78472876 Pumo5g03097 5 79480984 79482126 ECH
Pumo5g03097 5 79480984 79482126 Pumo4g03825 4 78471693 78472876 ECH
Pumo5g03097 5 79480984 79482126 Pumo3g03217 3 59431306 59432332 PCT