Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03083 ATGGCGAATCCGTTTGAAGTATTCGACTACTCCGACACTGAAGAGGAAGAAGAATATGGAACCACCAGCGACGAAGAAGACGAAGCGTACTTCCCCGCTGTTTCAAGAAGTAACCAAGAATTAATCTTTATCCCTGACGAATCGAAGAATCGCGTAGAAGAGGACGGATCAAGCAAAATCAGCATAACTGAAGAAGGCGAGGCTTCTCGTTCCGAAGGTCTCTTATGCCCTATTTGCATGGACGTTTGGACCAATAACGGCGAACATCACATCTGTTGTCTTCCTTGTGGACACATATATGGCATGTCTTGCATCAAAAAATGGCTTCAACACCGCAAAAATTCCAAGAAGTGTCCTCAATGTAATAGGAAATGTTCGTTGAAGGATGTGAGGAAACTCTATGCCTCTCCAGTAGTTGCCATTGATGAAGAATCTCAGAAGAGAATTCGGTCACTTGAGGCCAAATGTACAGCTCTTGAAAGTAAGGACAATGATTGGCACAAGAAAGAAGCTGAATGGCAGAAGAGAGAAGCTGCCTTGCATCTTCAAGTTCAGAAGCTTACACAGGACAATGATTGGCAAAAGAAAGAAGCTGAATGGAAGAAGAGACAAGCTGCCTTGCATGATCAAGTTCAGAAGCTTACAGAGGATATTGGTGGTGACAAGAGCCTAGGACAGGTTTACGACGCTGCAGAATTATTGAGTCAAGATTCTCAAATTCCTTCATTGAGGGATGAATTTAAGGAGAGACTTGCCAGAGCTGAGACTGAGAATATGACTGTTGAGCAGAGGATTGGTGTCTTGGAGCAACTAATTGAGGCCCTAGTCCCGTGGGTTGCAGAAGTGGAGCGGAAGTTCAGGCTTCTAGGGCCGCTGGTTGCAGCTTTGGAACGGAGGTTCTCTGGATGA 909 0.451 MANPFEVFDYSDTEEEEEYGTTSDEEDEAYFPAVSRSNQELIFIPDESKNRVEEDGSSKISITEEGEASRSEGLLCPICMDVWTNNGEHHICCLPCGHIYGMSCIKKWLQHRKNSKKCPQCNRKCSLKDVRKLYASPVVAIDEESQKRIRSLEAKCTALESKDNDWHKKEAEWQKREAALHLQVQKLTQDNDWQKKEAEWKKRQAALHDQVQKLTEDIGGDKSLGQVYDAAELLSQDSQIPSLRDEFKERLARAETENMTVEQRIGVLEQLIEALVPWVAEVERKFRLLGPLVAALERRFSG 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03083 302 SUPERFAMILY RING/U-box 71 128 - -
Pumo5g03083 302 Pfam Ring finger domain 76 122 IPR001841 -
Pumo5g03083 302 PANTHER RFWD3 PROTEIN 14 208 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Pumo5g03083 302 MobiDBLite consensus disorder prediction 9 25 - -
Pumo5g03083 302 SMART ring_2 76 121 IPR001841 -
Pumo5g03083 302 Coils Coil 244 271 - -
Pumo5g03083 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 187 IPR013083 -
Pumo5g03083 302 Coils Coil 142 162 - -
Pumo5g03083 302 ProSiteProfiles Zinc finger RING-type profile. 76 122 IPR001841 -
Pumo5g03083 302 CDD mRING-C3HGC3_RFWD3 72 134 - -
Pumo5g03083 302 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03083 Pumo-Chr5 79095926 79105731 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03083 75 161 C3H Transcription Factor Family AT4G01270 28.846 2.00e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03083 K15691 - gmx:100818898 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03083 5 79095926 79105731 Pumo5g03083 5 79095926 79105731 ECH