Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03082 ATGGAATCTCCGTACTATGAAATAATCGACGAAATCGCAGACACAGAGCAACATCTCATTGGAAACCTAAACCCCGCAGACTTTGGATTATCCGACGACGACGAAACCGACGATGAAGAGGACGAGGACGATGAAGATGACGAAGAGTATGTTCCCGCTGTGGTGTCTCCTAGGGTTACGCACGAAGCTCCTCTTAGCGTAGTTGTTATCGACGAATCGCAGAATTTCGTGGAAGAAGAGGGAAATAAGCGCCGCAGAACCGAAGGAGGCGAGGCTTCTTGTTCCTTCGCGAATGGGAGCGTCGATAGTAGCCAAGAGAACGAGTGGAACCGCGCCGATGTTGACGGTCTCGTTTGCCCTATTTGTATGGACTCTTGGACCAATAACGGCGAACATTGCATCTGTTGTCTTCCTTGTGGACACATATATGGCATGTCTTGCATCAAAAAATGGCTTCAACACCGCAAAAATTCCGCGAAGTGTCCTCAATGTAAAATGAAATGTTCGTTGAAGGATGTGAGGAAACTCTATGCCTCTCAAGTAGTTGCCGTTGAGGAAGAATCACAGAAGAGAATTCGGTCACTTGAGGCCAAATGTGCTGCCCTTGAAAGTAAGGGCAGTGATTGGCACAAGAAAGAAGCCGGATGGCAGAAGAGGGAAGCTGCATTGAATCTTCAAGTTCAGAAGCTTACAGAGAGAAACACTTATTTGGAGCAGATGCTACTAGATATGCAGAGCAGGCAATCTGCATCAATAATTGGCAGTGGAAACTCTCAATGGAGATGTGGATCTGAGCACAACTTTGACCCAAAGAACCATGGAAAGGGATCCATTTGCAATTTTCAATTGGAGAAAACGTTTCATCTGGACGGTGCTCGTGTTTTTGATATGGACTTTCCTAATCAAATTTTATTAATTGCTCAAAAGCCAAAGACAGTAGGTGGAATGCACTTGCTAACTAAAATGAGCTTGATGCCTCCATTTGAGATGCAAGACATCTTACTGCCTTCCGGCACAAATGTTGTTAAAGACCTACATATTTCTCCTTCTCATAGTAGTAGCCTGGCCCTCTTTGTTTCTCTAGGGAAGAAATTATCAGTGCTCAGCTTGGACAGTGGCAACCTTGTTGTCAATTATGACCTACAGGATCCTGCATGGTCTTGTTCATGGGATCTCAACAATTCGCATTACATATATGCTGGACTACAGAATGGTTCTGTCTTGGTGTTTGATATCCGCCAAACTGCGGGACCCATGAAATCTTTAGTTGGTTTGACTAGCAACCCTGTGCATACTGTACATTCTCTTGCACAAACTTCAAGTTTTTCTTCTGGTGTTAAAACCATCCTATCTGCATCTGCCATTGGCCTTTGTCAGTGGAACATTGATTCTGAAGAACGGCCGCTTATGGTTCCTGAAACTGATAATCAAGGAGTTTGCATATCCCTTGCCCATTGCCCTAGCAGTGATGACATTGTTGCTTCATACCGACCGAAATTTGACATATCCATGGATGTGCGTCTCTCTCAACCGTCCCTCACTCCTCTTAGTACTGGACGTGGAGTACAGGGCACTCATGTGTTGTTCAATAGAATGGGCAGTCATCATTTCCAAAAGGTGGGTTCCTCATATGCCAATGTGAGTAAAATTCAACTACCAAAATGTGTGATTATGGACATAGAGAATCAGAGCAGATTGTTTGCGTCTTGGGATGAAGTTACATTTGATTTGGTCTTGCATGAGTTGCCATCTTTTAGAGTTCTTCAGCAATTCAAAATGCCAGCTCAAGCCCGTGATCTTAGGTACTCACCTAGCCATGGAATACTGGGTTGTTTAAGTGAGAACACATTGCAGCTTTTCCATTCCAAACACTCGTGGGGAAGGTAA 1887 0.4436 MESPYYEIIDEIADTEQHLIGNLNPADFGLSDDDETDDEEDEDDEDDEEYVPAVVSPRVTHEAPLSVVVIDESQNFVEEEGNKRRRTEGGEASCSFANGSVDSSQENEWNRADVDGLVCPICMDSWTNNGEHCICCLPCGHIYGMSCIKKWLQHRKNSAKCPQCKMKCSLKDVRKLYASQVVAVEEESQKRIRSLEAKCAALESKGSDWHKKEAGWQKREAALNLQVQKLTERNTYLEQMLLDMQSRQSASIIGSGNSQWRCGSEHNFDPKNHGKGSICNFQLEKTFHLDGARVFDMDFPNQILLIAQKPKTVGGMHLLTKMSLMPPFEMQDILLPSGTNVVKDLHISPSHSSSLALFVSLGKKLSVLSLDSGNLVVNYDLQDPAWSCSWDLNNSHYIYAGLQNGSVLVFDIRQTAGPMKSLVGLTSNPVHTVHSLAQTSSFSSGVKTILSASAIGLCQWNIDSEERPLMVPETDNQGVCISLAHCPSSDDIVASYRPKFDISMDVRLSQPSLTPLSTGRGVQGTHVLFNRMGSHHFQKVGSSYANVSKIQLPKCVIMDIENQSRLFASWDEVTFDLVLHELPSFRVLQQFKMPAQARDLRYSPSHGILGCLSENTLQLFHSKHSWGR 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03082 628 SUPERFAMILY WD40 repeat-like 281 488 IPR036322 GO:0005515
Pumo5g03082 628 PANTHER RFWD3 PROTEIN 23 622 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Pumo5g03082 628 CDD mRING-C3HGC3_RFWD3 115 177 - -
Pumo5g03082 628 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 187 IPR013083 -
Pumo5g03082 628 MobiDBLite consensus disorder prediction 20 56 - -
Pumo5g03082 628 ProSiteProfiles Zinc finger RING-type profile. 119 165 IPR001841 -
Pumo5g03082 628 Gene3D - 188 506 IPR015943 GO:0005515
Pumo5g03082 628 Pfam Ring finger domain 119 165 IPR001841 -
Pumo5g03082 628 Coils Coil 185 205 - -
Pumo5g03082 628 SUPERFAMILY RING/U-box 110 171 - -
Pumo5g03082 628 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03082 Pumo-Chr5 79073622 79079104 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03082 118 205 C3H Transcription Factor Family AT4G01270 30.275 5.06e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03082 K15691 - gmx:100818898 900.197