Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03075 ATGGGTAGAGCTCCTTGTTGTGACAAGGCCAATGTAAAGAAAGGACCATGGTCACCTGAAGAAGATGCTAAGCTAAAGGATTACATAGAGGAACATGGCACTGGAGGGAATTGGATTGCCCTCCCACAAAAAGTTGGTTTGAAAAGATGTGGCAAGAGCTGTAGACTAAGGTGGCTTAATTATCTTAGACCCAACATTAAGCATGGTCAATTCTCTGATGCAGAAGATAAAATAATCTGCAGCCTCTTCGCTAGCATTGGAAGCAGGTGGTCCATAATAGCATCTCAGTTGCCAGGGAGGACTGACAATGATATCAAGAACTATTGGAACACCAAGCTTAAGAAGAAAATGATGGCCATGAATCCTTCACTCCAAAGGAAGCCTCAGCAAATTACCCTTTTGTCCATCCTTCAAACATCATCTTCACCATTGTCATTAAGAGACAGCAACAACATCTCATACTACCACCCCAACGGCTCCTTTTCCTACTCATCAAGTCTTGTGAGTGGAAACAACTCTTCTGTTTCTGCTGATTCCTTCTTTCAAGCACAAGAGAGTTTCATGGACCCCACTCAGAAGTGCCAATTCAAAGATAACAGCAGCAATAATAGCATGTTTGTGTTTGGTGGTGAAGCCACAGCCACAGCCACAGCCACTAGTTGCAGCTCTTCTGATGGGAGCTGCAACAACCAGATGAGCCATGTCATGGAGCCAGAGTTTGGTGATGCAAGTTTTGTTGGTGGGGCTAATAACCACCTCTACAGTGGGGTGGAAGATACTACTCACAAGTTGATGATGCTCTCCAATGGTGGTAGTGGTAGTGTTAATGGGTGGACAGACAAACAGAATGGATTGTGGGAACAAAATCCATTGGATTATGGTCTAGAGGAAATTAAACAGCTAATTAGCACTAATAACAGTTGCAACAACTTTTCGTTTGATGACAAGAAGACAGAAGAAAGAGTCACGTACTACTGA 978 0.4335 MGRAPCCDKANVKKGPWSPEEDAKLKDYIEEHGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGQFSDAEDKIICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMAMNPSLQRKPQQITLLSILQTSSSPLSLRDSNNISYYHPNGSFSYSSSLVSGNNSSVSADSFFQAQESFMDPTQKCQFKDNSSNNSMFVFGGEATATATATSCSSSDGSCNNQMSHVMEPEFGDASFVGGANNHLYSGVEDTTHKLMMLSNGGSGSVNGWTDKQNGLWEQNPLDYGLEEIKQLISTNNSCNNFSFDDKKTEERVTYY 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03075 325 SMART sant 13 64 IPR001005 -
Pumo5g03075 325 SMART sant 67 115 IPR001005 -
Pumo5g03075 325 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pumo5g03075 325 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pumo5g03075 325 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pumo5g03075 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Pumo5g03075 325 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pumo5g03075 325 CDD SANT 16 62 IPR001005 -
Pumo5g03075 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Pumo5g03075 325 Gene3D - 69 133 - -
Pumo5g03075 325 Gene3D - 7 68 - -
Pumo5g03075 325 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pumo5g03075 325 PANTHER OS09G0431300 PROTEIN 1 301 - -
Pumo5g03075 325 FunFam Transcription factor RAX3 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03075 Pumo-Chr5 78985816 78987898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03075 1 127 MYB Transcription Factor Family AT5G57620 81.890 1.28e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo5g03075 Myb_DNA-binding 3.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03075 K09422 - gmx:778084 561.992