Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03074 ATGTCAAAAGATTCTGAGGAGATAAAAACCATTGAGCAGTGGAAATGGTCCGAAATGCAAGGCCTTGAGCTTGTTCCTGAAGAGGGTGCTGCTGCACCTTCACAACACCAAGTTCCAAGGGAAATGAGTTCTGAACCCAACAAAGATGTTGCTACTGCTGCAGTTAATAGTAACGGTGGTGGAGAGAAAAAAGAGAGTGTTCCCTCTGTTGGGTTTGGAGAGCTTTTCAGATTCGCTGATGGGTTGGATTATGTTCTCATGGGAATTGGAACGGTTGGAGCAGTTGTGCACGGTTGTTCTCTGCCTCTCTTTCTTCGCTTCTTTGCGGATCTTGTCAATTCCTTTGGCTCCAATGCTAATGATGTTGACAAGATGACTCAGGAAGTGGTCAAGTATGCATTTTACTTCCTGGTGGTGGGGGCTGCTATATGGGCATCTTCATGGGCAGAGATTTCGTGTTGGATGTGGAGCGGGGAGCGGCAATCGACCAAGATGAGAATCAAGTATCTGGAGGCTGCGTTGAACCAGGACATTCAGTTCTTTGACACCGAGGTTCGGACATCCGATGTTGTTTTTGCCATCAACACTGATGCTGTCATGGTTCAGGATGCCATTAGTGAGAAGTTGGGGAATTTCATTCACTACATGGCCACCTTTGTTTCTGGCTTTGTTGTGGGTTTCACTGCTGTGTGGCAATTGGCTCTGGTCACTCTTGCTGTTGTCCCTATGATAGCTGTGATTGGAGGCATTCACACCACCACCTTGGCCAAGCTCTCTGGTAAGAGCCAGGAAGCTCTTTCTCAAGCTGGCAACATTGTGGAACAGACAGTTGCACAAATCCGAGTAGTGCTGGCCTTTGTTGGGGAGTCCAGGGCATTGCAGGCCTATTCATCAGCCTTGAGGGTTGCACAGAAGATTGGCTACAAAACTGGGTTTGCAAAGGGAATGGGATTGGGTGCCACTTACTTTGTTGTTTTTTGCTGTTATGCACTTCTTCTATGGTATGGAGGATATCTGGTTAGGCACCACGCCACCAATGGAGGACTTGCCATTGCAACCATGTTTGCTGTTATGATCGGTGGATTGGGTTTGGGGCAATCTGCACCAAGCATGGCTGCATTCACAAAGGCCAGAGTTGCTGCTGCAAAGATTTTCCGTATAATTGATCACAAGCCGGGTATTGATCGAAATAGTGAATCTGGCGTTGAACTAGACACAGTTACTGGACTTGTGGAGCTGAAAAATGTGGACTTTTCTTACCCATCTAGGCCAGAGGTTCGGATCCTCAATGATTTCTCCTTGAATGTGCCTGCTGGCAAGACCATAGCTTTGGTGGGTAGCAGTGGCTCTGGCAAGAGCACTGTTGTCTCCCTCATTGAGAGATTCTATGACCCAACTTCAGGACAAGTTCTGCTAGATGGGCATGACATTAAAACTTTGAAGCTTAGATGGCTGAGGCAGCAGATAGGACTAGTGAGCCAAGAGCCTGCTTTGTTTGCTACCACAATAAGAGAAAACATACTGTTGGGTAGGCCTGATGCAGACCAGGTTGAGATTGAAGAAGCTGCAAGGGTTGCTAATGCTCATTCCTTCATCATTAAACTTCCTGATGGCTATGAAACCCAGGTTGGAGAAAGAGGGTTGCAACTTTCTGGAGGGCAAAAACAGAGAATAGCAATAGCAAGGGCAATGCTGAAAAACCCTGCAATTCTTCTCCTAGACGAGGCAACAAGTGCATTGGACTCAGAGTCAGAAAAGCTAGTGCAAGAAGCCCTTGACCGATTCATGATTGGCAGAACAACTCTTGTAATTGCCCATCGCCTCTCCACAATTCGCAAAGCTGACCTTGTAGCTGTACTTCAGCAAGGAAGTGTTTCTGAAATTGGAACTCATGATGAGCTCTTCTCAAAAGGTGAAAATGGAGTCTATGCCAAGCTTATAAAGATGCAGGAAATGGCTCATGAAACTGCCATAAATAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCCAGAAACTCTGTAAGCTCACCAATAATTGCTAGGAATTCTTCTTATGGACGGTCGCCATACTCGCGTAGGCTATCTGATTTCTCTACATCTGATTTTAGTCTGTCCCTTGATGCATCACATCCAAGTTACAGGCTCGAAAAGCTTGCTTTCAAAGAGCAAGCTAGTTCCTTCTGGAGACTTGCAAAAATGAACTCTCCTGAATGGCTTTATGCTTTAATTGGCTCTATAGGGTCTGTTGTTTGTGGATCCCTTAGTGCCTTCTTTGCTTATGTTCTTAGTGCTGTCCTCAGTGTGTATTACAATCCAGACCACAGATACATGATCCGCGAAATAGAAAAGTACTGCTACTTGTTGATTGGCCTTTCATCAACTGCACTTCTCTTCAACACATTGCAACACTCCTTCTGGGACATTGTCGGGGAAAATCTTACAAAACGCGTGAGGGAGAAAATGCTGACGGCAGTGCTCAAAAATGAAATGGCATGGTTTGATCAGGAGGAAAATGAGAGTGCCAGGATTGCTGCAAGGCTGGCTCTTGATGCCAACAATGTCAGATCAGCCATTGGAGATCGAATTTCAGTAATTGTGCAGAACACTGCACTTATGCTAGTTGCCTGTACTGCAGGGTTTGTGTTGCAGTGGCGCCTTGCCCTTGTCCTCATAAGCGTCTTTCCTGTTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGCGACCTGGAAGCTGCTCATGCCAAGGCTACACAACTAGCAGGAGAAGCTATAGCCAATGTAAGGACTGTTGCAGCCTTCAATTCAGAAACAAAAATTGTTGGCCTTTTCACCTCCAATCTCCAAGCTCCACTACAGCGTTGTTTTTGGAAGGGACAAATTTCTGGAAGTGGATATGGTGTAGCTCAGTTTGCACTTTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGCTAGTGAAGCATGGCATCTCTGACTTCTCTAAAACAATCCGAGTTTTTATGGTCCTAATGGTTTCTGCAAATGGTGCTGCTGAAACTTTAACACTGGCTCCTGACTTTATCAAAGGAGGCCGAGCCATGAGGTCAGTCTTTGATCTCCTTGACCGCAGAACTGAAATTGAGCCTGATGATCAAGATGCCACTCCTGTTCCTGATCGTCTTCGTGGTGAAGTTGAACTTAAGCATGTAGACTTCTCTTATCCAACTCGCCCGGATATGCCAGTTTTTCGTGACCTAAGTCTTCGTGCAAGGGCTGGTAAAACTCTTGCCCTTGTAGGACCTAGTGGCTGTGGTAAGAGCTCAGTTATTGCACTTATACAGAGATTCTATGATCCAACATCTGGTCGGGTCATGATTGATGGCAAAGACATCAGGAAATACAACCTCAAGTCCTTAAGGAGGCACATTTCTGTGGTACCTCAGGAGCCATGCTTGTTTGCCACTACTATTTATGAAAACATTGCTTATGGGCATGAGTCAGCCACTGAAGCTGAGATAATTGAAGCTGCAACTCTTGCCAATGCACACAAGTTCATATCTGCTTTGCCAGAAGGATACAAAACATTTGTTGGGGAGAGAGGTGTTCAACTGTCCGGGGGACAAAAGCAAAGAATAGCCGTTGCTCGGGCTTTTGTGAGGAAGGCTGAACTTATGCTTCTTGATGAGGCCACAAGTGCACTTGATGCTGAATCTGAGAGGTCTGTTCAGGAGGCTCTAGACCGCGCCTCATCAGGAAAAACAACTATCATTGTTGCACACAGGCTATCAACTATCAGGAATGCCAATCTAATTGCTGTGATTGATGATGGGAAAGTAGCTGAGCAAGGCTCCCATTCACAGTTGTTGAAAAATCACCCGGATGGGATTTATGCGCGCATGATTCAGTTACAAAGGTTCACACACAGCCAAGTCATTGGAATGGCCTCAGGTTCAAGCTCTTCAACAAGACCAAAAGATGATGAAAGAGAAGGCTAG 3999 0.4579 MSKDSEEIKTIEQWKWSEMQGLELVPEEGAAAPSQHQVPREMSSEPNKDVATAAVNSNGGGEKKESVPSVGFGELFRFADGLDYVLMGIGTVGAVVHGCSLPLFLRFFADLVNSFGSNANDVDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWSGERQSTKMRIKYLEAALNQDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGGIHTTTLAKLSGKSQEALSQAGNIVEQTVAQIRVVLAFVGESRALQAYSSALRVAQKIGYKTGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLGLGQSAPSMAAFTKARVAAAKIFRIIDHKPGIDRNSESGVELDTVTGLVELKNVDFSYPSRPEVRILNDFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDADQVEIEEAARVANAHSFIIKLPDGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEMAHETAINNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHPSYRLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSVVCGSLSAFFAYVLSAVLSVYYNPDHRYMIREIEKYCYLLIGLSSTALLFNTLQHSFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLISVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSETKIVGLFTSNLQAPLQRCFWKGQISGSGYGVAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRRTEIEPDDQDATPVPDRLRGEVELKHVDFSYPTRPDMPVFRDLSLRARAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHESATEAEIIEAATLANAHKFISALPEGYKTFVGERGVQLSGGQKQRIAVARAFVRKAELMLLDEATSALDAESERSVQEALDRASSGKTTIIVAHRLSTIRNANLIAVIDDGKVAEQGSHSQLLKNHPDGIYARMIQLQRFTHSQVIGMASGSSSSTRPKDDEREG 1332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03074 1332 CDD ABC_MTABC3_MDL1_MDL2 411 650 - -
Pumo5g03074 1332 Gene3D ABC transporter type 1, transmembrane domain 722 1031 IPR036640 GO:0005524|GO:0016020
Pumo5g03074 1332 Gene3D - 1055 1306 IPR027417 -
Pumo5g03074 1332 Gene3D - 401 651 IPR027417 -
Pumo5g03074 1332 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 89 376 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo5g03074 1332 SUPERFAMILY ABC transporter transmembrane region 75 395 IPR036640 GO:0005524|GO:0016020
Pumo5g03074 1332 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 411 647 IPR003439 GO:0005524
Pumo5g03074 1332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 402 650 IPR027417 -
Pumo5g03074 1332 FunFam ABC transporter B family member 1 722 1031 - -
Pumo5g03074 1332 Pfam ABC transporter 1085 1233 IPR003439 GO:0005524
Pumo5g03074 1332 CDD ABC_MTABC3_MDL1_MDL2 1066 1305 - -
Pumo5g03074 1332 CDD ABC_6TM_Pgp_ABCB1_D1_like 87 384 - -
Pumo5g03074 1332 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 743 1030 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo5g03074 1332 SMART AAA_5 1093 1285 IPR003593 GO:0016887
Pumo5g03074 1332 SMART AAA_5 438 624 IPR003593 GO:0016887
Pumo5g03074 1332 MobiDBLite consensus disorder prediction 25 66 - -
Pumo5g03074 1332 Pfam ABC transporter transmembrane region 88 361 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo5g03074 1332 Pfam ABC transporter transmembrane region 744 1013 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo5g03074 1332 Gene3D ABC transporter type 1, transmembrane domain 1032 1309 IPR036640 GO:0005524|GO:0016020
Pumo5g03074 1332 FunFam ABC transporter B family member 19 1032 1054 - -
Pumo5g03074 1332 Gene3D ABC transporter type 1, transmembrane domain 74 663 IPR036640 GO:0005524|GO:0016020
Pumo5g03074 1332 PANTHER ABC TRANSPORTER B FAMILY 47 795 IPR039421 -
Pumo5g03074 1332 FunFam ABC transporter B family member 1 1056 1306 - -
Pumo5g03074 1332 ProSitePatterns ABC transporters family signature. 1205 1219 IPR017871 GO:0005524|GO:0016887
Pumo5g03074 1332 ProSitePatterns ABC transporters family signature. 550 564 IPR017871 GO:0005524|GO:0016887
Pumo5g03074 1332 FunFam ABC transporter B family member 1 74 409 - -
Pumo5g03074 1332 CDD ABC_6TM_Pgp_ABCB1_D2_like 732 1048 - -
Pumo5g03074 1332 MobiDBLite consensus disorder prediction 1313 1332 - -
Pumo5g03074 1332 Pfam ABC transporter 429 578 IPR003439 GO:0005524
Pumo5g03074 1332 FunFam ABC transporter B family member 1 401 651 - -
Pumo5g03074 1332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1057 1305 IPR027417 -
Pumo5g03074 1332 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1066 1302 IPR003439 GO:0005524
Pumo5g03074 1332 SUPERFAMILY ABC transporter transmembrane region 730 1050 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03074 Pumo-Chr5 78955518 78962239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03074 63 1327 Calmodulin-binding Proteins AT2G36910 90.126 0.0 2338