Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03062 ATGAAGTGTTTTCCATTCTCCTATGGAGAGAAGAAAGATGAACCAAAAGGCTTGCAGTTGCAGTCGACATCGGGTCGATCGGACAATTCCACATATGTTGAGGCTGAGGTTAGAAGATCTGGTTCTGAGTTAAATTCTCTGGATGTTTCAGACAATGGCAGCACAGAATCCCTCAGGAGGAATGCAATTCCCAGTTTGTCCCAGAGACCCAGCAACCTCAGAGTGTTTACTGTATCTGAACTGAAATCAGCCACAAAGAATTTCAGTCGCTCTGTTATGATTGGAGAGGGTGGGTTTGGGTGTGTCTACCTGGGATTGATTAAAAGTGTGGAGGACACCTCCAGAAGAATTGAAGTTGCAGTTAAACAGCTTAGTAAAAGAGGAATGCAGGGGCATAGGGAATGGGTGACAGAAGTGAATGTTCTGGGCATTGTTGAGCATCCCAATCTTGTGAAACTAGTGGGTTACTGTGCTGATGATGATGAAAGAGGAATCCAGCGGCTTCTGATTTATGAATACATGCCAAACAGAAGTGTGGAACACCATTTATCTCACCGATCAGAGACTCCTCTCTCATGGAGTAGGAGATTAAAAATAGCTCGAGATGCAGCTCGTGGGTTAACATACCTGCATGAGGAAATGGATTTCCAGATAATTTTCAGAGATTTCAAATCTTCAAATATCCTATTGGATGAACAGTGGAACGCGAAGCTATCAGACTTTGGGTTAGCAAGGTTGGGACCATCAGATGGACTGACTCATGTCTCAACAGCGGTTGTAGGAACAATGGGATATGCAGCTCCTGAATATGTTCAAACTGGACGTCTAACATCAAAGAATGATGTATGGAGCTACGGTGTCTTCCTTTATGAACTCATCACTGGTAGGCGCCCTTTAGATCGAAATCGCCCCAGGGGTGAGCAGAAGCTGTTGGAATGGATAAGGCCATACCTATCAGATGGGAAGAAATTTCAACTAATATTAGATCCAAGACTTGATAAGAAACAAGTCTTCAAGTCAGCCCAGAGACTTGCTATGATAGCTAACCAATGCTTGGTAAAAAATCCAAAGAATCGCCCAAAGATGAGTGAGGTATTGGAAATGGTGAATGGAATGGTAGAATCTTCCTCCAGTTCTAGTCCACAGTTGCCCTTGAGGAGTGTGGCGACTTCGGAACCTTCCCAGGATACTGAAACAAATAACAAGAAACGAACCATGGATCAGAAGCCTGGAGAAAGTAATTGGTTTGTTAGGATGTGGAGACCAAAGCTTGTAAGAACATGTTGA 1287 0.4359 MKCFPFSYGEKKDEPKGLQLQSTSGRSDNSTYVEAEVRRSGSELNSLDVSDNGSTESLRRNAIPSLSQRPSNLRVFTVSELKSATKNFSRSVMIGEGGFGCVYLGLIKSVEDTSRRIEVAVKQLSKRGMQGHREWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLIYEYMPNRSVEHHLSHRSETPLSWSRRLKIARDAARGLTYLHEEMDFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYVQTGRLTSKNDVWSYGVFLYELITGRRPLDRNRPRGEQKLLEWIRPYLSDGKKFQLILDPRLDKKQVFKSAQRLAMIANQCLVKNPKNRPKMSEVLEMVNGMVESSSSSSPQLPLRSVATSEPSQDTETNNKKRTMDQKPGESNWFVRMWRPKLVRTC 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03062 428 SUPERFAMILY Protein kinase-like (PK-like) 65 369 IPR011009 -
Pumo5g03062 428 PANTHER OS01G0588500 PROTEIN-RELATED 50 370 - -
Pumo5g03062 428 MobiDBLite consensus disorder prediction 43 57 - -
Pumo5g03062 428 Gene3D Transferase(Phosphotransferase) domain 1 174 387 - -
Pumo5g03062 428 Gene3D Phosphorylase Kinase; domain 1 68 173 - -
Pumo5g03062 428 CDD STKc_IRAK 94 372 - -
Pumo5g03062 428 FunFam Serine/threonine-protein kinase BIK1 55 173 - -
Pumo5g03062 428 ProSitePatterns Protein kinases ATP-binding region signature. 94 122 IPR017441 GO:0005524
Pumo5g03062 428 MobiDBLite consensus disorder prediction 373 413 - -
Pumo5g03062 428 MobiDBLite consensus disorder prediction 1 57 - -
Pumo5g03062 428 MobiDBLite consensus disorder prediction 1 17 - -
Pumo5g03062 428 ProSiteProfiles Protein kinase domain profile. 88 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03062 428 MobiDBLite consensus disorder prediction 18 36 - -
Pumo5g03062 428 Pfam Protein tyrosine and serine/threonine kinase 93 367 IPR001245 GO:0004672|GO:0006468
Pumo5g03062 428 FunFam Serine/threonine-protein kinase PCRK2 174 382 - -
Pumo5g03062 428 MobiDBLite consensus disorder prediction 373 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03062 Pumo-Chr5 78779050 78783631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03062 1 384 Glycoside Hydrolase AT3G07070 41.071 9.86e-91 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pumo5g03062 PK_Tyr_Ser-Thr 3.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03062 - - gmx:100813060 819.69