Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03056 ATGAATGACGAGACTCTTGTTATGGATGAAGATGGAGGGGATGCCCATTCTGGGTGCATGGAGGGATTGACTAAAGAATGTAAAGATAATGCACAAGCAAATCCTCATATCAAAGATAAAAAAGGTGGTGAGGAAGTTGTATGTTCCAATTGCATGCGAGGCGGAGTACTTTTATGTTGCTCTGGAAAAGGATGTCAAAGGAGGTACCATCCCTCTTGTTTGGATCCTCCTCTCAATTACATTCCGTTGGGGTTTTGGCATTGTATCTGGTGCACTAAGAAAAAGATGGAGTTTGGCGTGCATTCTGTTTCTAAAGGAGTGAAATCCATCTTGGATTCTAGAGAAGTGGTTTCAAACAATAAAGTGATGCAAAGGGAGTACTTTGTCAAGTATCATGGTCTTGCTCATTTTCACAACCGCTGGATTCCTGAATCAAAAATGCTTCTCGAGGCTCCTAAGCTCTTGGCCAAGTTTAAGAGGAAACTGCAGGTTACCAGGTGGAAAAGAGATTGGAGTATACCTCACCGCTTGCTGCTAAAAAGGGAAATTGTATTATCAAAACAAAATGATCAACATTTTGATGGGCATGGTGATAATGATTCAACTTGCCGTTATGAGTGGCTTGTCAAATGGACTGGTCTTGGTTATGATAATGCTACGTGGGAGTTAGATGATGCTTCATTTTTTATGTCACTTGAAGGCAGGAAACTCATAGATGATTATGAAAGTCGTTGCAAGAGAGCAGATAGACTGTCAAAAAATCATTTTGAAGCTAATGAGGAGAGAAAAGCTTCCTTTGCTGAATTATCAGTGTTGCCATCTGGAGATTCACCAGGATTTTATAACCAGCATTTGACTTATGTGAACCAGCTTCGCATGTGTTGGCACAAAGGTCAGAGTGGTCTTATTGTAGATGATCAAATTGACCAGGAGCGGGTTATGAAGGTGATTTTGTTTATATTATCTTTGAATTGTAATGTGAAGAGGCCTTTTCTCATCATCTCAACTTCTACTGCCCTCTCTGTGTGGGAGACAGAGTTCTTACATTTGGCACCATCTGCCAATCTTGTAGTTTACAAGGGAAACAGAGATGTACGGAGTGGCATCAGGGCATTAGAGTTTTTTAATGAAGATGGTGGCATATTATTTCAAATACTGTTATCATCTTCTAATATTGTTGTTAAGGACTTGCATGAACTAAGATGCATTCCATGGGAAGCAATAATAATTGATGAATGCCAGCAATCCAGAATTTCAGGACACTTTGACAATATCAAGATTCTAAAAGCTGAAATGAGGCTCCTTCTTGTTAGTGGACAAATCAAGGAAGATCCAGCTGATTATATCAAACTGCTTTCATTCCTCAAGTCTGGACATCATGGGTCAAGTATTGCTCAAATAGAAACTTATTTCTCTGCTAGCATTTCCAATTTGAAGAGAGAATTGGAAAAATATGTTGTATTCAAATGCAAATCTGGCTTCACTAGGTTTGTAGAGTATTGGGTTCCAGCCTGCCTTTCCAGTTTGCAGCTTGAGCAGTATTGTTCAATGCTGCTTTCAAACTTAATGTTGTTATGCTCAGGCCAAAAGTCTGACTCAGTTGATGCCCTCCATGACCTTATTATCTCAACAAGGAAGTGCTGTGACCACCCTTATCTCCTGGACCCAACACTGCATAGTTTTGTTACTAAAGGTCTACCTGTTGAACAGCATTTAAATATTGGCATACAAGCAAGTGGAAAACTGCAACTTCTTGAAAAAATCCTTTTGGAAGCAAGAAGTCGTGGGTTAAGGGTGTTAATATTATTTCAGTCAACTTGTGGTTCTTCTGGATCGATTGGAGATATTTTGGATGATGTTCTCTGCCAGAGATTTGGTAAAGATTGCTATGTACGATATGATAGAGGATATACCCCAAAAACGAAGCAAGCTGCTTTAGACACATTTAATGATAGTGACAGTGGAAAATTTGTCTTCTTGATGGAAAATCGTGCTTGTCTCTCTAGTGTTAAGCTTTCTTCAGTGGACACTGTTATATTGTTTGACAGTGATTTGGACCCACAGAATGACCTAAGGGGCTTACAAAGGATGTCTATCAGCTCGCAGTTTAAACACTTTACCGTTTTCAGATTGTACTCATATTTCACTGTTGAAGAAAAAGTTTTAATGCATGCAAAAGAGGGTATAGCTCTTGACAGCAATGTGCAGTTGCTTAGCCAGAGTATTTGTCACACCCTGCTAAAATGGGGTGCCTCCTATCTGTTCAATAAGCTTGATGACTTACATGCCAGTGCTGTTTCTACTCCAGACATTGCAGATAAATCACTTTTATGTGATGTAATCTGTGAATTATCATCCCAATTGGTTTGTGGTGCTGATGATACTGATTGCCATGGATGGTCATTCATATCAAGAATACAGCAGAATGGAGGGGAATATGCAAGGGACATTTTATTGCTAGGAGAAAGAATAATGAAATTGGGCAGTGAGCCATGTGGTTTTTCCTGGAGTGATCTTGAAGGAAGGCATCCTCAATGGAAATTTTTGTCTGTTTCATCTCAGAGGTTCAGGAAAACAGTCAAACATTTTAATTACATACTAAAAGAATCTGAATGTGAAAAAGATACCTCTATAGAAAAGAGGACAGCGTCGAAGGATAATGTTGATCCAAACAGGAGGAAAGTTTCCAAGGATAATGTTGATCCTGAGTGGAGGAAATTGACCACGGATAAAGTTGACCCCAAGAGGAGGAAAGTGTCCAATGATGTTGAAACAAAGGGGAGGAAAGTGTCAAATCAAACCATTGATCCTAAGACTAGGAAGGTGTCCAATGATATTGTTGATTCTAAGGGCAGGAAAGTGTCCAAGAATATTGTTGATTCCAAATATTGGAAAACAAGTTTGAAGAACAAGAATCCAAGTGTTGTCAACAGAGCAAGTAAATCAAATGGGCATCCCTTGACCAATGAAACTACAGGAAAAACTGCAACAAACATGCAATTGTCAGAGAAAAAGAAACTGCTTGACATACCAAATAGCATCAATGTCTTGCCAAAACCTGATATATCAGGTCTTTGCGACATTCTACATTTTTCGAAAAAAGTCAAGGATGTCGCCGTGAGGATTCTAGAGCACATATTCAAACATTACAATGTTAATTGCCAAGAAGTTTCTACTGTACAGGCTTTTGAAATATCCGTGTGTTGGCTAGCAGCTTCTTTGTTGAAACATGAGATCGATATGAAGGATTCACTTGCTCTTGCAAAACTGTACTTGAACTTCAATTGCAAGGAAGAGGAAGCCACCGATGTTTACTCAGAACTGTGGAAGCATGTGAAGGATTTTTCTAATTGTGTACAAAATGGACTTTGTGTTGAGAAATGTAATATTGCTTCAGACTCCAACATGCCTGAGCTGAATGATTTGGCAGAGGAGGAGAAGCAGAAGGATTTTCTGGGTACTTGTGTTTCAAAACTTGTGAAATTATCTGTCACAAATGAACATGATCTTCAAATGAAATCTCCCACAACAGTGGTTTCACAAGACCAGACTTGTACTCATGCAATTTGTTTATCTCCAAATACACCCGGTAGTTTTCCTGTGGAAGCAGATGCTATCTCGATGGAATCTGGCTCAGAAGATGACAGAATGAATGCTACGACCTTAATAACAGCAGAAGATTCATCCCTTGAGCGCTGGAGTAATGATGTCAACCCCGTTACAGGTTCTTTGGAAAGACAGAGTCCTATTAGAAGTACAGATATTACACAATCTGATGGCGAAGTTTTTGAAGATCCTCAAATTTTAGTGAATGAAGTGGTTGCTATTGACAATGCTATGAATATGTCTACTCATTCTGTGCAGCTTGACAGTGTTGAGGCAGATGCTGTAACTTCTGTTAGTACTGCTGTTCCTGAGGTCAGACAGTGGTACAGTGTAATGAGTCCTGTATGTGGTGAGTCAACTGCTCTGGAGTTTCCTGAGACTACCTTACCATATATGCAACCATCAGATTCAAATTTGTGGGCATTGCCTCAGATGGCAATGTCTGCTATTCCATCTTTTCCAGAGAACAATTCAGCTAGTACAGTCATGCCTCTAGATGATATTTTTTATCATAGTAGTGAGGATCATTGCTACATTCACGAGGCTGAAATAATATTGGAAGCACCAAACAACCTTGTGGAACCAGTTAACTCTTCCTTTGATTCACCTGTGATACTGCAACCCTTCACTAGTGTGCCCATGAATGAAAATACGACACATGTACCTGACATCATTACTATTCCTGGATTTATGAACAGTGATTATTTTCAAGCTCACTCTCTGACATCTGAAGTGTCCCACCTTGCCTACCCAGACCCACTACTGGGTGAAATGGAGATAATAGAGAACTTGAATGAAGAAGCCTTCATAGATCCACTACCAATAGAAATGGAGAGAATACAAAGGGAGAATGAAGAAGCCTTCAAGACACATGAGCAAAAGATATTGCAGCTCCAATCTGACTATGAGAAGGAGGTTGAAAAGTTGAGTGTAAAGTACAGGATGTTGCTTCAGAATGTCGATACTGAAGTAGCACTAAAAAGAATGGAACTTGAGACGCAATGTAAATTAGTGTTAAGGAATAAGGTTTTAGCTCAAGTTTGGATCCATAGTCTTGATAGTTGTGAAAGAGCTGTGGTACAGTGCACAGAGCAAGATGCAATGCCTAGTTTTCGTATGACTGCTCAAGACTAA 4740 0.3951 MNDETLVMDEDGGDAHSGCMEGLTKECKDNAQANPHIKDKKGGEEVVCSNCMRGGVLLCCSGKGCQRRYHPSCLDPPLNYIPLGFWHCIWCTKKKMEFGVHSVSKGVKSILDSREVVSNNKVMQREYFVKYHGLAHFHNRWIPESKMLLEAPKLLAKFKRKLQVTRWKRDWSIPHRLLLKREIVLSKQNDQHFDGHGDNDSTCRYEWLVKWTGLGYDNATWELDDASFFMSLEGRKLIDDYESRCKRADRLSKNHFEANEERKASFAELSVLPSGDSPGFYNQHLTYVNQLRMCWHKGQSGLIVDDQIDQERVMKVILFILSLNCNVKRPFLIISTSTALSVWETEFLHLAPSANLVVYKGNRDVRSGIRALEFFNEDGGILFQILLSSSNIVVKDLHELRCIPWEAIIIDECQQSRISGHFDNIKILKAEMRLLLVSGQIKEDPADYIKLLSFLKSGHHGSSIAQIETYFSASISNLKRELEKYVVFKCKSGFTRFVEYWVPACLSSLQLEQYCSMLLSNLMLLCSGQKSDSVDALHDLIISTRKCCDHPYLLDPTLHSFVTKGLPVEQHLNIGIQASGKLQLLEKILLEARSRGLRVLILFQSTCGSSGSIGDILDDVLCQRFGKDCYVRYDRGYTPKTKQAALDTFNDSDSGKFVFLMENRACLSSVKLSSVDTVILFDSDLDPQNDLRGLQRMSISSQFKHFTVFRLYSYFTVEEKVLMHAKEGIALDSNVQLLSQSICHTLLKWGASYLFNKLDDLHASAVSTPDIADKSLLCDVICELSSQLVCGADDTDCHGWSFISRIQQNGGEYARDILLLGERIMKLGSEPCGFSWSDLEGRHPQWKFLSVSSQRFRKTVKHFNYILKESECEKDTSIEKRTASKDNVDPNRRKVSKDNVDPEWRKLTTDKVDPKRRKVSNDVETKGRKVSNQTIDPKTRKVSNDIVDSKGRKVSKNIVDSKYWKTSLKNKNPSVVNRASKSNGHPLTNETTGKTATNMQLSEKKKLLDIPNSINVLPKPDISGLCDILHFSKKVKDVAVRILEHIFKHYNVNCQEVSTVQAFEISVCWLAASLLKHEIDMKDSLALAKLYLNFNCKEEEATDVYSELWKHVKDFSNCVQNGLCVEKCNIASDSNMPELNDLAEEEKQKDFLGTCVSKLVKLSVTNEHDLQMKSPTTVVSQDQTCTHAICLSPNTPGSFPVEADAISMESGSEDDRMNATTLITAEDSSLERWSNDVNPVTGSLERQSPIRSTDITQSDGEVFEDPQILVNEVVAIDNAMNMSTHSVQLDSVEADAVTSVSTAVPEVRQWYSVMSPVCGESTALEFPETTLPYMQPSDSNLWALPQMAMSAIPSFPENNSASTVMPLDDIFYHSSEDHCYIHEAEIILEAPNNLVEPVNSSFDSPVILQPFTSVPMNENTTHVPDIITIPGFMNSDYFQAHSLTSEVSHLAYPDPLLGEMEIIENLNEEAFIDPLPIEMERIQRENEEAFKTHEQKILQLQSDYEKEVEKLSVKYRMLLQNVDTEVALKRMELETQCKLVLRNKVLAQVWIHSLDSCERAVVQCTEQDAMPSFRMTAQD 1579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03056 1579 CDD SF2_C_SNF 579 697 - -
Pumo5g03056 1579 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 100 IPR013083 -
Pumo5g03056 1579 SMART chromo_7 104 163 IPR000953 -
Pumo5g03056 1579 SMART chromo_7 170 246 IPR000953 -
Pumo5g03056 1579 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 318 475 IPR027417 -
Pumo5g03056 1579 SUPERFAMILY Chromo domain-like 64 165 IPR016197 -
Pumo5g03056 1579 Gene3D - 106 162 - -
Pumo5g03056 1579 MobiDBLite consensus disorder prediction 877 930 - -
Pumo5g03056 1579 Pfam Chromo (CHRromatin Organisation MOdifier) domain 107 161 IPR023780 -
Pumo5g03056 1579 Pfam SNF2-related domain 288 553 IPR000330 GO:0005524|GO:0140658
Pumo5g03056 1579 Gene3D - 164 244 - -
Pumo5g03056 1579 Gene3D - 1471 1552 - -
Pumo5g03056 1579 ProSiteProfiles Zinc finger PHD-type profile. 45 94 IPR019787 -
Pumo5g03056 1579 MobiDBLite consensus disorder prediction 974 993 - -
Pumo5g03056 1579 SUPERFAMILY Chromo domain-like 204 244 IPR016197 -
Pumo5g03056 1579 ProSiteProfiles Chromo and chromo shadow domain profile. 105 170 IPR000953 -
Pumo5g03056 1579 ProSiteProfiles Chromo and chromo shadow domain profile. 179 253 IPR000953 -
Pumo5g03056 1579 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 584 754 IPR001650 -
Pumo5g03056 1579 Gene3D - 284 496 IPR038718 -
Pumo5g03056 1579 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 292 459 IPR014001 -
Pumo5g03056 1579 SMART PHD_3 47 92 IPR001965 -
Pumo5g03056 1579 ProSitePatterns Zinc finger PHD-type signature. 48 91 IPR019786 -
Pumo5g03056 1579 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 494 735 IPR027417 -
Pumo5g03056 1579 Gene3D - 497 732 IPR027417 -
Pumo5g03056 1579 SUPERFAMILY FYVE/PHD zinc finger 36 96 IPR011011 -
Pumo5g03056 1579 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 65 1187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03056 Pumo-Chr5 78720580 78737208 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo5g03056 SNF2_N 5e-09 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03056 - K11643 gmx:100813574 2513.8