Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03055 ATGGAAGCAACTACCATTACCAACGGACACCAAAACGATTCGTTTTGCTTGTCCAGTAAGGGCAGTGACCCGTTAAACTGGGGAGTGGCTGCGGAGGCGCTGAAGGGGAGCCACCTGGACGAGGTGAAGCGCATGGTGGCGGAGTACCGGAAGCCGGTGGTCCGGCTGGGCGGCGAGACGCTGACGATCGCTCAGGTGGCGGCGGTGGCCGGACACGACCAGGGGGTGAGGGTGGAGCTGTCGGAGTCGGCTCGGGAAGGTGTTAAGGCGAGCAGTGAGTGGGTGATGAACAGCATGAACAATGGGACCGACAGTTACGGTGTCACCACCGGCTTCGGTGCCACCTCTCACCGCCGAACCAAACAAGGTGGTGCTTTGCAGAAAGAACTCATCAGGTTTCTAAACGCTGGAATCTTTGGAAATGGAACTGAATCAAGCCACACCCTGCCCCACACTGCAACCAGAGCAGCCATGTTAGTGAGGATCAACACCCTTCTTCAGGGGTACTCAGGCATTAGATTTGAAATCTTAGAAGCCATCACCAAGCTCCTAAACAACAACGTTACCCCATGTTTACCACTTCGTGGTACAATCACAGCTTCTGGAGATCTTGTTCCACTTTCTTACATTGCTGGTTTGCTAACTGGCAGACCCAACTCCAAAGCTGTTGGGCCTTCTGGGGAGGTACTTAATGCTAAGGAAGCTTTTGAATTGGCTAACATCAATTCTGAGTTCTTTGAATTGCAACCCAAGGAAGGCCTTGCCCTTGTTAATGGCACAGCTGTTGGTTCTGGCTTAGCTTCTATGGTTCTCTTTGAGGCTAATATTTTAGCTGTGCTGTCTGAAGTTTTATCAGCTATTTTTGCTGAAGTGATGCAAGGGAAACCTGAATTTACTGACCATTTGACACACAAGTTAAAGCACCATCCTGGTCAAATTGAGGCCGCCGCAATTATGGAGCACATTTTGGATGGAAGTTCCTACATGAAAGCTGCTAAGAAGTTGCATGAGATAGATCCCTTGCAAAAGCCAAAACAAGATAGATATGCCCTTAGAACTTCACCACAATGGCTTGGTCCTCTTATTGAAGTGATTCGTTTCTCAACCAAGTCAATTGAGAGGGAGATTAACTCTGTCAATGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCATTACATGGTGGTAATTTCCAAGGAACCCCAATTGGAGTCTCTATGGACAACACACGTTTGGCTCTTGCATCTATTGGTAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGATTTTTACAACAATGGGTTGCCTTCAAATCTCACTGCCAGCAGAAATCCTAGCTTGGACTATGGTTTCAAGGGAGCTGAAATTGCCATGGCTTCTTACTGCTCTGAACTCCAATATCTTGCAAATCCAGTAACAAGCCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTCAACTCTTTGGGTTTGATTTCATCTAGGAAGACAAATGAAGCTATTGAGATCCTTAAGCTCATGTCTTCCACATTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAAAACTCGGTGAAGAACACTGTGAGCCAAGTGTCCAAAAGGATTCTTACCACAGGTGTCAATGGAGAACTCCATCCTTCAAGATTTTGTGAAAAGGATCTGCTAAAAGTGGTTGATAGGGAGTATGTATTTTCCTACATAGATGACCCCTGCAGTGCTACATACCCATTGATGCAAAAACTTAGGCAAGTGCTTGTAGATCATGCATTGGTAAATGCAGAGAATGAGAAGGATGTGAACACTTCAATCTTTCAAAAGATTGCAACCTTTGAGGAGGAGTTGAAGACTCTCTTGCCAAAGGAGGTTGAAAGTGCAAGGGCTGCTTATGAGAGTGGCAAAGCTGCAATTCCAAACAAGATCCAAGAATGCAGATCATACCCACTATACAAGTTTGTGAGAGAGGAATTAGGGACTGGGTTGCTAACTGGAGAAAAGGTCAGGTCACCAGGTGAAGAGTTTGACAAATTATTTACAGCAATGTGTCAGGGCAAAATTATTGATCCTCTTCTGGAGTGCCTTGGGGAGTGGAATGGAGCACCTCTTCCAATCTGTTAA 2145 0.4597 MEATTITNGHQNDSFCLSSKGSDPLNWGVAAEALKGSHLDEVKRMVAEYRKPVVRLGGETLTIAQVAAVAGHDQGVRVELSESAREGVKASSEWVMNSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKEAFELANINSEFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLKNSVKNTVSQVSKRILTTGVNGELHPSRFCEKDLLKVVDREYVFSYIDDPCSATYPLMQKLRQVLVDHALVNAENEKDVNTSIFQKIATFEEELKTLLPKEVESARAAYESGKAAIPNKIQECRSYPLYKFVREELGTGLLTGEKVRSPGEEFDKLFTAMCQGKIIDPLLECLGEWNGAPLPIC 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03055 714 Gene3D - 15 260 IPR024083 -
Pumo5g03055 714 FunFam Phenylalanine ammonia-lyase 527 648 - -
Pumo5g03055 714 SUPERFAMILY L-aspartase-like 23 714 IPR008948 GO:0003824
Pumo5g03055 714 Pfam Aromatic amino acid lyase 61 537 IPR001106 -
Pumo5g03055 714 CDD PAL-HAL 59 524 IPR001106 -
Pumo5g03055 714 FunFam Phenylalanine ammonia-lyase 261 569 - -
Pumo5g03055 714 NCBIfam phenylalanine ammonia-lyase 23 703 IPR005922 GO:0005737|GO:0006559|GO:0016841
Pumo5g03055 714 Gene3D Fumarase/aspartase (Central domain) 261 709 - -
Pumo5g03055 714 Gene3D - 527 648 IPR023144 -
Pumo5g03055 714 FunFam Phenylalanine ammonia-lyase 15 260 - -
Pumo5g03055 714 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 196 212 IPR022313 GO:0016841
Pumo5g03055 714 PANTHER HISTIDINE AMMONIA-LYASE 16 714 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03055 Pumo-Chr5 78705584 78719140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03055 23 714 Monolignol Biosynthesis Gene Families AT2G37040 84.538 0.0 1253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03055 K10775 - gmx:100811101 1370.53