Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03051 ATGCTATTTCAGGAATTTGCAGTGAGAACTGGTTACTATATGATGGAGTCAAAGGAGAAACTGAAAGAGGTGGAGAAGTGTTTGGATTCTCAGCTATGGCATGCGTGTGCGGGAGGGATGGTGCAAATGCCAGTGGTGAATGCTAAGGTGTTCTACTTTCCTCAGGGTCATGCTGAACATGCATGTGGACCCGTGGACTTCAGGGCTTATCCCAAAATTCCACCTTTCATTCAATGCAGAGTGGGAGCTATCAAATACATGGCTGATCCTGAAACTGATGAGGTTTATGTGAAGCTTAGGTTTCTTCCTTTGAATAGCAACGAGGGTGATTTTGAGGATGATGGTGTTGGGGGCATCAATGGATCTGAAAATAAAGACAAACCCCCTTCTTTTGCAAAAACTTTGACACAGTCTGATGCCAACAATGGTGGTGGCTTTTCTGTTCCCAGATATTGTGCTGAGACAATTTTTCCTCGGTTGGACTATTCTGCAGACCCTCCTGTTCAGAACATCCTTGCCAAGGATGTTCATGGCGAGACATGGAAGTTCAGGCACATTTATAGGGGCACGCCGCGGCGGCACTTGTTAACCACAGGGTGGAGTACTTTTGTGAACCACAAGAAGCTTGTGGCGGGGGATTCAATTGTGTTTCTGAGGGCAGAAAATGGTGATCTATGTGTTGGGATTCGGCGCGCCAAGAGAGGAATTGGCATTGGTGGAGGACCTGAGGCTCCTTCAGGGTGGAATTCAGCTGGGGGGATTCGTCCTGTGCCTTATGGAGGAGGGTTTTCAGCGTTTTTTAGAGAGGAAGATAGCCAACTCTTGAGAAATGGTAATGGTAACGGGTTGAGTCCAAATGCAAAGGGGAAAGTGAGGCCTGAAGCAGTTATTGAGGCTGCAACTCTTGCTACTAATATGCAGCCATTTGAGGTTGTTTACTATCCTAGGGCAAGTTCCCCAGAGTTTTGTGTTAAGGCATCTTTAGTTAGAGCAGCATTGCAGGTTAGGTGGTGTCCTGGAATGAGGTTCAAGATGCCCTTTGAAACCGAGGACTCGTCGCGGATAAGTTGGTTTATGGGAACCATATCTTCTGTTAGTGTTGCTGATCCAAGATGGCCTGACTCTCCTTGGAGACTTCTCCAGGTTACATGGGATGAACCAGAGTTACTTCAAAATGTGAAAAGGGTGAGCCCGTGGCTGGTTGAAATTGTATCAAACATGCCTACCATTCCTCTTTCTTCCCCTTTCATACCCCCAAAGAAGAAGCAAAGATTCCCTCAACACCCGGATTTTCCCCTTGAAGGCCAGATTTCATTGCCAACATTTCCCAGCAACTTTCTAGGTCCCAACAATCCCTTTGGTTGTCTAGCTGAAAGTACTCCTGCTGGCATACAGGGAGCCAGGCATGCTAATTATGGTATATCCCTATCAAATCTCCACCTCCATAAACTGCAGTCAGGTCTATTTCAAGCTGGTTTCCCTCCACTTGATCACACTACTGCTTCACCAATATTGAGGGTCTCCTCCAACAACAACCCAGCAACAATGCAAAAGGCCGGCACGAGTGACAACGTCTCTTGCTTATTGTCCATGGCAACTGCTACTCAACCTTCAAAGAAAGTGGATGATGTGAAGGCACCCCAATTGGTGCTTTTTGGCCAAACTATTCTCACCGAACAGCAAATCTCTCTGAACACCTCTACTAACACAGATCCTACTAGAAATAGTTCATTGGATGGAAATGCTGATAATATGACCAAGTTCTCAGATGGTTCCCATTCTGCTGTTCACCCACAACACTCTTCTCTTGAGAGGTTACAGTGGTACAAGGATCACCACAAAGAAACCGTGGCTAGTTTGGAGACAGGTCACTGTAAAGTTTTTATGGAATCAGAAGATGTTGGTCGGACTATGGACCTCTCATTGCTTGGGTCTTATGATGAATTGTACAGAAAGCTTGCAGACATGTTTGGCATAGAAAAATCTGTGGTGCTAAGTCACGTGCTTTACCGCGATACAACTGGGGCAGTCAAGCACATTGGAGATGAAGCATTCAGTGACTTCACCAAAACTGCAAGGAGGTTGACCATTCTAATGGATTCCAACATCGATAGTAGAGGAATGTAG 2127 0.4593 MLFQEFAVRTGYYMMESKEKLKEVEKCLDSQLWHACAGGMVQMPVVNAKVFYFPQGHAEHACGPVDFRAYPKIPPFIQCRVGAIKYMADPETDEVYVKLRFLPLNSNEGDFEDDGVGGINGSENKDKPPSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGIGGGPEAPSGWNSAGGIRPVPYGGGFSAFFREEDSQLLRNGNGNGLSPNAKGKVRPEAVIEAATLATNMQPFEVVYYPRASSPEFCVKASLVRAALQVRWCPGMRFKMPFETEDSSRISWFMGTISSVSVADPRWPDSPWRLLQVTWDEPELLQNVKRVSPWLVEIVSNMPTIPLSSPFIPPKKKQRFPQHPDFPLEGQISLPTFPSNFLGPNNPFGCLAESTPAGIQGARHANYGISLSNLHLHKLQSGLFQAGFPPLDHTTASPILRVSSNNNPATMQKAGTSDNVSCLLSMATATQPSKKVDDVKAPQLVLFGQTILTEQQISLNTSTNTDPTRNSSLDGNADNMTKFSDGSHSAVHPQHSSLERLQWYKDHHKETVASLETGHCKVFMESEDVGRTMDLSLLGSYDELYRKLADMFGIEKSVVLSHVLYRDTTGAVKHIGDEAFSDFTKTARRLTILMDSNIDSRGM 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03051 708 MobiDBLite consensus disorder prediction 563 596 - -
Pumo5g03051 708 SUPERFAMILY DNA-binding pseudobarrel domain 126 233 IPR015300 -
Pumo5g03051 708 Gene3D - 336 409 - -
Pumo5g03051 708 ProSiteProfiles PB1 domain profile. 622 702 IPR000270 GO:0005515
Pumo5g03051 708 FunFam Auxin response factor 337 409 - -
Pumo5g03051 708 Pfam B3 DNA binding domain 131 232 IPR003340 GO:0003677
Pumo5g03051 708 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 25 702 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo5g03051 708 Gene3D - 129 233 IPR015300 -
Pumo5g03051 708 CDD B3_DNA 129 231 IPR003340 GO:0003677
Pumo5g03051 708 Gene3D - 619 705 - -
Pumo5g03051 708 Pfam Auxin response factor 299 381 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pumo5g03051 708 FunFam Auxin response factor 129 233 - -
Pumo5g03051 708 SMART B3_2 131 233 IPR003340 GO:0003677
Pumo5g03051 708 MobiDBLite consensus disorder prediction 112 138 - -
Pumo5g03051 708 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03051 Pumo-Chr5 78619460 78623416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03051 24 705 B3 DNA Binding Superfamily AT4G30080 57.925 0.0 742
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo5g03051 B3 3.8e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03051 - - gmx:100791442 1261.51