LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo5g03051	ATGCTATTTCAGGAATTTGCAGTGAGAACTGGTTACTATATGATGGAGTCAAAGGAGAAACTGAAAGAGGTGGAGAAGTGTTTGGATTCTCAGCTATGGCATGCGTGTGCGGGAGGGATGGTGCAAATGCCAGTGGTGAATGCTAAGGTGTTCTACTTTCCTCAGGGTCATGCTGAACATGCATGTGGACCCGTGGACTTCAGGGCTTATCCCAAAATTCCACCTTTCATTCAATGCAGAGTGGGAGCTATCAAATACATGGCTGATCCTGAAACTGATGAGGTTTATGTGAAGCTTAGGTTTCTTCCTTTGAATAGCAACGAGGGTGATTTTGAGGATGATGGTGTTGGGGGCATCAATGGATCTGAAAATAAAGACAAACCCCCTTCTTTTGCAAAAACTTTGACACAGTCTGATGCCAACAATGGTGGTGGCTTTTCTGTTCCCAGATATTGTGCTGAGACAATTTTTCCTCGGTTGGACTATTCTGCAGACCCTCCTGTTCAGAACATCCTTGCCAAGGATGTTCATGGCGAGACATGGAAGTTCAGGCACATTTATAGGGGCACGCCGCGGCGGCACTTGTTAACCACAGGGTGGAGTACTTTTGTGAACCACAAGAAGCTTGTGGCGGGGGATTCAATTGTGTTTCTGAGGGCAGAAAATGGTGATCTATGTGTTGGGATTCGGCGCGCCAAGAGAGGAATTGGCATTGGTGGAGGACCTGAGGCTCCTTCAGGGTGGAATTCAGCTGGGGGGATTCGTCCTGTGCCTTATGGAGGAGGGTTTTCAGCGTTTTTTAGAGAGGAAGATAGCCAACTCTTGAGAAATGGTAATGGTAACGGGTTGAGTCCAAATGCAAAGGGGAAAGTGAGGCCTGAAGCAGTTATTGAGGCTGCAACTCTTGCTACTAATATGCAGCCATTTGAGGTTGTTTACTATCCTAGGGCAAGTTCCCCAGAGTTTTGTGTTAAGGCATCTTTAGTTAGAGCAGCATTGCAGGTTAGGTGGTGTCCTGGAATGAGGTTCAAGATGCCCTTTGAAACCGAGGACTCGTCGCGGATAAGTTGGTTTATGGGAACCATATCTTCTGTTAGTGTTGCTGATCCAAGATGGCCTGACTCTCCTTGGAGACTTCTCCAGGTTACATGGGATGAACCAGAGTTACTTCAAAATGTGAAAAGGGTGAGCCCGTGGCTGGTTGAAATTGTATCAAACATGCCTACCATTCCTCTTTCTTCCCCTTTCATACCCCCAAAGAAGAAGCAAAGATTCCCTCAACACCCGGATTTTCCCCTTGAAGGCCAGATTTCATTGCCAACATTTCCCAGCAACTTTCTAGGTCCCAACAATCCCTTTGGTTGTCTAGCTGAAAGTACTCCTGCTGGCATACAGGGAGCCAGGCATGCTAATTATGGTATATCCCTATCAAATCTCCACCTCCATAAACTGCAGTCAGGTCTATTTCAAGCTGGTTTCCCTCCACTTGATCACACTACTGCTTCACCAATATTGAGGGTCTCCTCCAACAACAACCCAGCAACAATGCAAAAGGCCGGCACGAGTGACAACGTCTCTTGCTTATTGTCCATGGCAACTGCTACTCAACCTTCAAAGAAAGTGGATGATGTGAAGGCACCCCAATTGGTGCTTTTTGGCCAAACTATTCTCACCGAACAGCAAATCTCTCTGAACACCTCTACTAACACAGATCCTACTAGAAATAGTTCATTGGATGGAAATGCTGATAATATGACCAAGTTCTCAGATGGTTCCCATTCTGCTGTTCACCCACAACACTCTTCTCTTGAGAGGTTACAGTGGTACAAGGATCACCACAAAGAAACCGTGGCTAGTTTGGAGACAGGTCACTGTAAAGTTTTTATGGAATCAGAAGATGTTGGTCGGACTATGGACCTCTCATTGCTTGGGTCTTATGATGAATTGTACAGAAAGCTTGCAGACATGTTTGGCATAGAAAAATCTGTGGTGCTAAGTCACGTGCTTTACCGCGATACAACTGGGGCAGTCAAGCACATTGGAGATGAAGCATTCAGTGACTTCACCAAAACTGCAAGGAGGTTGACCATTCTAATGGATTCCAACATCGATAGTAGAGGAATGTAG	2127	0.4593	MLFQEFAVRTGYYMMESKEKLKEVEKCLDSQLWHACAGGMVQMPVVNAKVFYFPQGHAEHACGPVDFRAYPKIPPFIQCRVGAIKYMADPETDEVYVKLRFLPLNSNEGDFEDDGVGGINGSENKDKPPSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGIGGGPEAPSGWNSAGGIRPVPYGGGFSAFFREEDSQLLRNGNGNGLSPNAKGKVRPEAVIEAATLATNMQPFEVVYYPRASSPEFCVKASLVRAALQVRWCPGMRFKMPFETEDSSRISWFMGTISSVSVADPRWPDSPWRLLQVTWDEPELLQNVKRVSPWLVEIVSNMPTIPLSSPFIPPKKKQRFPQHPDFPLEGQISLPTFPSNFLGPNNPFGCLAESTPAGIQGARHANYGISLSNLHLHKLQSGLFQAGFPPLDHTTASPILRVSSNNNPATMQKAGTSDNVSCLLSMATATQPSKKVDDVKAPQLVLFGQTILTEQQISLNTSTNTDPTRNSSLDGNADNMTKFSDGSHSAVHPQHSSLERLQWYKDHHKETVASLETGHCKVFMESEDVGRTMDLSLLGSYDELYRKLADMFGIEKSVVLSHVLYRDTTGAVKHIGDEAFSDFTKTARRLTILMDSNIDSRGM	708

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo5g03051	708	MobiDBLite	consensus disorder prediction	563	596	-	-
	Pumo5g03051	708	SUPERFAMILY	DNA-binding pseudobarrel domain	126	233	IPR015300	-
	Pumo5g03051	708	Gene3D	-	336	409	-	-
	Pumo5g03051	708	ProSiteProfiles	PB1 domain profile.	622	702	IPR000270	GO:0005515
	Pumo5g03051	708	FunFam	Auxin response factor	337	409	-	-
	Pumo5g03051	708	Pfam	B3 DNA binding domain	131	232	IPR003340	GO:0003677
	Pumo5g03051	708	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	25	702	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
	Pumo5g03051	708	Gene3D	-	129	233	IPR015300	-
	Pumo5g03051	708	CDD	B3_DNA	129	231	IPR003340	GO:0003677
	Pumo5g03051	708	Gene3D	-	619	705	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo5g03051	Pumo-Chr5	78619460	78623416	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo5g03051	24	705	B3 DNA Binding Superfamily	AT4G30080	57.925	0.0	742

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Pumo5g03051		B3	3.8e-21	CL0405

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo5g03051	-		-	gmx:100791442	1261.51

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