Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03048 ATGGCGAAAGACATCGAATCCGAGGTACAAAGTGGGTTGCCACACAAGGACTATTACGACCCACCCCCCGCCCCATTCTACGACCCCGCCGAGCTCCGCAAGTGGTCCTTCTACAGAGCCCTCATCGCCGAGTTCGTCGCCACCCTCCTCTTCCTCTACGTCACCATCCTCACCGTCATCGGCTACAACCACCAGACCGCTGCCGGCGGCCCCGACCTCTGCAACGGCGTCGGCATCCTCGGCATCGCTTGGGCCTTCGGCGGCATGATTTTCGTCCTCGTCTACTGCACCGCCGGCATTTCAGGGGGTCACATAAACCCGGCGGTGACGTTTGGGTTGTTTCTGGCGAGGAAGGTGTCGCTGGTTAGAGCAGTTGCGTACATGGTGGCGCAGGTGTTGGGGGCCATAAGTGGCGTGGGGCTCGTGAAGGCTTTTCAGAAGAGCTACTACAACAGGTACAAAGGTGGCGCCAACTTGCTCGCTGATGGCTACAGCAAAGGCACTGGCTTGGGCGCTGAGATTATTGGCACCTTTGTTCTTGTCTACACCGTCTTCTCCGCTACCGATCCCAAGAGAAAAGCCAGAGATTCCCATGTTCCCGTGTTGGCACCACTTCCAATTGGGTTTGCCGTGTTCATGGTTCACTTGGCCACCATCCCTATCACCGGCACTGGTATAAACCCCGCTAGAAGCCTCGGGCCTGCTGTCATATACAACAACGAGAAGGCATGGGATGACCAGTGGATCTTCTGGGTTGGACCCTTCATCGGCGCTGCCATTGCTGCAATCTACCACCAGTACGTGTTGAGGGCCCAAGCGGCAAAAGCTCTCGGGTCTTTCAGGAGCTCCTCAACCCTCTAA 861 0.5738 MAKDIESEVQSGLPHKDYYDPPPAPFYDPAELRKWSFYRALIAEFVATLLFLYVTILTVIGYNHQTAAGGPDLCNGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVAYMVAQVLGAISGVGLVKAFQKSYYNRYKGGANLLADGYSKGTGLGAEIIGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGPAVIYNNEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAQAAKALGSFRSSSTL 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03048 286 CDD MIP 39 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g03048 286 SUPERFAMILY Aquaporin-like 31 270 IPR023271 -
Pumo5g03048 286 Pfam Major intrinsic protein 31 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g03048 286 Gene3D Glycerol uptake facilitator protein. 24 286 IPR023271 -
Pumo5g03048 286 FunFam Probable aquaporin PIP1-2 24 284 - -
Pumo5g03048 286 PRINTS Major intrinsic protein family signature 248 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g03048 286 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g03048 286 PRINTS Major intrinsic protein family signature 123 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g03048 286 PRINTS Major intrinsic protein family signature 86 110 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g03048 286 PRINTS Major intrinsic protein family signature 172 190 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g03048 286 PRINTS Major intrinsic protein family signature 208 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g03048 286 NCBIfam MIP family channel protein 43 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g03048 286 ProSitePatterns MIP family signature. 104 112 IPR022357 -
Pumo5g03048 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 14 280 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03048 Pumo-Chr5 78518517 78521284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03048 1 286 Major Intrinsic Protein MIP AT3G53420 80.208 2.26e-166 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03048 K09872 - gmx:100785783 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03048 5 78518517 78521284 Pumo3g01289 3 20453623 20456530 ECH
Pumo5g03048 5 78518517 78521284 Pumo5g03048 5 78518517 78521284 ECH
Pumo3g03218 3 59460992 59462889 Pumo5g03048 5 78518517 78521284 ECH
Pumo5g03048 5 78518517 78521284 Pumo4g03877 4 79115547 79116702 ECH