Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03046 ATGAAGAATCCTTGTTCTTTTTGTACTTGTTTCTCAGCATCGGTCAAAGAACAAACCAAGCACGAGGAGCCAGTTGAATACAATGATGGCAACTTTCGCATATTCACTTATAGAGAATTGAATTCTGCCACACGTGGTTTTCATCCCTCGGAAAAGATTGGAGAAGGAGGCTTTGGCTCTGTCTACAAGGGGCAGCTTCGGGATGGAACTTTGGTGGCCGTGAAAGTGCTCTCGATTGAGCTAGATTCATTGAGAGGAGAGAAGGAGTTTGTGGCAGAATTGAATACACTGGCAAATATCAAGCACCAAAATCTTGTCATTCTCCGAGGGTGTTGTGTAGAAGGAGCCCACAGATACATTGTCTACGATTACATGGAAAACAATAGCCTTCGCTACACTTTCTTAGGTTCAGAGCAAAGAAGGATGGAATTCAGCTGGGAAACTCGGAGGGATGTATCCATAGGTGTGGCCAGTGGGCTTGCCTTTCTCCATGAGGAACATCAACCCCATATTGTGCATAGAGATATCAAATCCAGCAATGTCCTTCTTGATCGAAATTTTACACCAAAAGTCTCAGATTTCGGCTTGGCCAAGCTACTAAGAGATGAAAAGTCCCACGTCACTACCCATGTTGCAGGCACATTGGGTTATCTCGCTCCAGACTATGCTAGTTCTGGACACTTGACACGAAAATCTGATGTTTATAGCTTTGGAGTACTACTTTTAGAAATTGTCAGTGGCCAACGAGTGGTAGATGCTCATCAAAACGTGGAACGTTTCATAGTTGAGAAGGCATGGGCAGCATATGAGGCTAATGATCTTCTGAGAATGGTGGATCCAGTGCTGAATAAGAACTATCCCGTGGAAGAAGCAAAACGGTTCCTTGTGGTGGGGCTGCGTTGCGTGCAAGAAACGGCTAGGCTTAGGCCACGAATGTCAGAGGTTGTGGACATGTTGACCAACAATGTTGAGATGGGAGAGTTTAGTATTTCACAACCAGGATTTGTCAATGATCTCAGAAGCGCCAGAAACAGAAGGCAAATGAATCCATCAGAAGAATCAAGTTCTACTGCAGCAACCTTTGCAGACTCCTCTGGATGGAGTACCACCAATCTTGCCCGTTAG 1125 0.4498 MKNPCSFCTCFSASVKEQTKHEEPVEYNDGNFRIFTYRELNSATRGFHPSEKIGEGGFGSVYKGQLRDGTLVAVKVLSIELDSLRGEKEFVAELNTLANIKHQNLVILRGCCVEGAHRYIVYDYMENNSLRYTFLGSEQRRMEFSWETRRDVSIGVASGLAFLHEEHQPHIVHRDIKSSNVLLDRNFTPKVSDFGLAKLLRDEKSHVTTHVAGTLGYLAPDYASSGHLTRKSDVYSFGVLLLEIVSGQRVVDAHQNVERFIVEKAWAAYEANDLLRMVDPVLNKNYPVEEAKRFLVVGLRCVQETARLRPRMSEVVDMLTNNVEMGEFSISQPGFVNDLRSARNRRQMNPSEESSSTAATFADSSGWSTTNLAR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03046 374 Gene3D Transferase(Phosphotransferase) domain 1 125 331 - -
Pumo5g03046 374 ProSiteProfiles Protein kinase domain profile. 47 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03046 374 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 366 - -
Pumo5g03046 374 CDD STKc_IRAK 53 321 - -
Pumo5g03046 374 FunFam Serine/threonine-protein kinase receptor 16 124 - -
Pumo5g03046 374 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Pumo5g03046 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Pumo5g03046 374 Pfam Protein kinase domain 48 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03046 374 MobiDBLite consensus disorder prediction 344 374 - -
Pumo5g03046 374 SUPERFAMILY Protein kinase-like (PK-like) 31 336 IPR011009 -
Pumo5g03046 374 SMART serkin_6 47 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03046 374 Gene3D Phosphorylase Kinase; domain 1 8 124 - -
Pumo5g03046 374 FunFam Putative LRR receptor-like serine/threonine-protein kinase 125 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03046 Pumo-Chr5 78498470 78500840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03046 35 338 Receptor kinase-like Gene Family AT1G56120 48.860 2.87e-94 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo5g03046 Pkinase 3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03046 - - gmx:100790388 637.106