Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03045 ATGGGCAACATCTCAAGCGGCGGCGGCAACCCCCGTCGCCGCCACAGCGTAGGCTCACGGCGGAGTCACCCGCCGCCGCCTCCGCCGGTGACGCCGCAGCCTGAGATCGCCGCGAATCCATTCGTGTACCATGGTGCTGCCGCGCCGTACCCGAACCCTCCCCTGCATTACCCGCAGTACCATTACCCCGGTTACTACCCTCCGGTGCCTCCTATGCCTCATCATCACCATCATCATCATCCACACATGGACCCGGCGTGGATTCCGGGGCGTTACCCTTGTGGGCCCATGATGCCTAACCCTACACCTTTTGTTGAGCATCAGAAGGCCGTTACCATAAGAAACGATGTCAATATCAGGAAAGAGACCCTTAGGCTTGAACCCGATGAAGAAAATTCTGGCCACTTCCTTGTCTCCTTTTCCTTCGATGCCACCGTTTCTGGGAGCATCACCATATATTTCTTTGCAAAAGAAGGCGAAGACTGCGTCCTCACACCAATGAAGGAAAACCATCTTGCACCTGTGACTGTGCATTTCGAGCAAGGTCTTGGCCAGAAGTTTAGACAGGCAGCTGGAACTGGTATTGATTTTTCAGTTTTTGAGGAGTCTGAGTTATTGAAAGTGGGTGACATGGATGTCTACCCTCTAGCAGTGAAGGCAGATGCATCCTCTGGTAATCATGATGAGTCTGATAGAACTCCACCAACATCTGGTAACACAAATTCTCAGATTACCCAAGTGGTGTTTGAGAAGGAGAAAGGAGAGTTACGGGTGAAAGTTGTTAAGCAGATTTTGTGGGTGAATGGAATGAGGTATGAGCTGCAGGAGATATATGGTATTGGAAATTCAACAGAGAGTGACGTGGACGAGAGTGACCAAGGAAAAGAATGCGTCATTTGCTTGTCAGAGCCTCGAGATACAATTGTCCATCCCTGCCGGCATATGTGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACAAATAGATGCCCAATTTGCAGACAACCAGTTGAGAGGCTCTTGGAGATAAAGGTAGGCTCTGAGGAGTGA 1056 0.5066 MGNISSGGGNPRRRHSVGSRRSHPPPPPPVTPQPEIAANPFVYHGAAAPYPNPPLHYPQYHYPGYYPPVPPMPHHHHHHHPHMDPAWIPGRYPCGPMMPNPTPFVEHQKAVTIRNDVNIRKETLRLEPDEENSGHFLVSFSFDATVSGSITIYFFAKEGEDCVLTPMKENHLAPVTVHFEQGLGQKFRQAAGTGIDFSVFEESELLKVGDMDVYPLAVKADASSGNHDESDRTPPTSGNTNSQITQVVFEKEKGELRVKVVKQILWVNGMRYELQEIYGIGNSTESDVDESDQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGSEE 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03045 351 ProSiteProfiles Zinc finger RING-type profile. 297 336 IPR001841 -
Pumo5g03045 351 MobiDBLite consensus disorder prediction 1 36 - -
Pumo5g03045 351 MobiDBLite consensus disorder prediction 21 35 - -
Pumo5g03045 351 CDD mRING-HC-C3HC5_MGRN1-like 295 336 IPR045195 -
Pumo5g03045 351 SMART ring_2 297 335 IPR001841 -
Pumo5g03045 351 SUPERFAMILY RING/U-box 296 341 - -
Pumo5g03045 351 PANTHER MAHOGUNIN 1 346 IPR045194 GO:0061630
Pumo5g03045 351 MobiDBLite consensus disorder prediction 221 242 - -
Pumo5g03045 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 346 IPR013083 -
Pumo5g03045 351 Pfam Zinc finger, C3HC4 type (RING finger) 295 341 - -
Pumo5g03045 351 FunFam probable E3 ubiquitin-protein ligase LOG2 281 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03045 Pumo-Chr5 78478480 78482483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03045 35 316 C3H Transcription Factor Family AT3G09770 55.806 6.95e-104 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03045 - - gmx:100807343 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03045 5 78478480 78482483 Pumo5g03045 5 78478480 78482483 ECH
Pumo5g03045 5 78478480 78482483 Pumo3g03290 3 60538746 60543359 PCT