Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03043 ATGGCAACTGAAGCACATGACCAAGCCACTTCTAGTAGAGCTCATAACCCAATTCAAAAGGATGTAGAGTCATCAGAAATAACCGAGGAACTCCCTAGTAGACATGCACATGGGAGAAGGAAAAACCTTATCTTGGAGATACCCACAAGAACGCTGGATGAAACAAGAGAGGAATTTTTTAGAACAAACCAACCTCCAACTTCATCTCTTAGAAGCCAAATCAATGAGTTCCAAGGTCCCTCGTCAACCAAAAATGAATCAACTACTAAAACTCTTATTCCCAAGCTCAGTTTTAAGTTTCACAACACAAGTTCAGATGTTGAAGAGGCTCCCATGCCAGCACTTGAAGGTTCACCCCCAGAGCCACTGCAAGAGCCTATGATTTCAAGAACATTATCACCTAATGCGAAGAAAATATCATCCTTACCTGTCACCCCAATTGCTCAGCCAAATCTGGAGTCAGAACATGGAGGGAACATTGCCTATCCAGAACCACATAAAAAAGGTCAGCAACTACCGATGCACCGTTCCCGTTCAGTTCCCGTGCTTACCGAAGATAGCAACACATATGTAGGAGCCATGTTTCGTATTGTTCCTACCACACCACAGTTGGCAAGGAGTATTGCCACGACTTCTACGAAATCTCCACCTGACGATACCGTTGAAAAAGAGGATGGGGAAGATATTCCCGAAGAAGAAGCCGTCTGCAGAATTTGTTTGATTGAATTGGGAGAAGGTTCTGATACCCTTAAAATGGAGTGCAGCTGCAAAGGTGAACTTGCACTGGCACACCAAGAGTGTGCAGTTAAATGGTTTAGCATTAAAGGCAACAGAACATGTGATGTGTGCAAGCAAGAAGTTCAGAACCTACCTGTCACACTTTTACGAGTTCTAAATGGCCGTACACTACACTTGACAAGGAGCAGAAGTCAACAATATAGGGTTTGGCAAAATGTTCCCATTCTTGTGATTATCAACATGCTGGCATACTTTTGTTTTCTTGAGCAGCTACTTGTTTCAAGTATGGGATCTGGTGCCGTTGCCATTTCTCTCCCCTTTTCATGTATACTAGGTCTACTTGCAAGCATGACATCCACAATAATGGTGACGTGTGAACATGTTTGGGTTTATGCAATTGCCCAGTTTGTTATGGTGGTTCTCGCTGGACGTATTTTCTATTCACTGCTTAATAAGCAAGCTGTTCTATCTATCCTACTTGCTACATTTACTGGGTTTGGAGCTGTGATGTGTGGAGCTTATATTCTTATTGAGTTTTTGAAGTGGAGAAGGCGATGGCTTGGTCAGTTGAATCAACAGCATGGTTCCCAAGAGGTGGTACTGCCTCATTAA 1350 0.4311 MATEAHDQATSSRAHNPIQKDVESSEITEELPSRHAHGRRKNLILEIPTRTLDETREEFFRTNQPPTSSLRSQINEFQGPSSTKNESTTKTLIPKLSFKFHNTSSDVEEAPMPALEGSPPEPLQEPMISRTLSPNAKKISSLPVTPIAQPNLESEHGGNIAYPEPHKKGQQLPMHRSRSVPVLTEDSNTYVGAMFRIVPTTPQLARSIATTSTKSPPDDTVEKEDGEDIPEEEAVCRICLIELGEGSDTLKMECSCKGELALAHQECAVKWFSIKGNRTCDVCKQEVQNLPVTLLRVLNGRTLHLTRSRSQQYRVWQNVPILVIINMLAYFCFLEQLLVSSMGSGAVAISLPFSCILGLLASMTSTIMVTCEHVWVYAIAQFVMVVLAGRIFYSLLNKQAVLSILLATFTGFGAVMCGAYILIEFLKWRRRWLGQLNQQHGSQEVVLPH 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03043 449 MobiDBLite consensus disorder prediction 149 177 - -
Pumo5g03043 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 291 IPR013083 -
Pumo5g03043 449 PANTHER OS02G0165000 PROTEIN 3 446 - -
Pumo5g03043 449 MobiDBLite consensus disorder prediction 19 60 - -
Pumo5g03043 449 MobiDBLite consensus disorder prediction 1 90 - -
Pumo5g03043 449 ProSiteProfiles Zinc finger RING-CH-type profile. 228 290 IPR011016 GO:0008270
Pumo5g03043 449 SMART ringv_2 235 284 IPR011016 GO:0008270
Pumo5g03043 449 MobiDBLite consensus disorder prediction 208 227 - -
Pumo5g03043 449 MobiDBLite consensus disorder prediction 1 18 - -
Pumo5g03043 449 SUPERFAMILY RING/U-box 232 287 - -
Pumo5g03043 449 CDD RING_CH-C4HC3_MARCH 236 284 - -
Pumo5g03043 449 MobiDBLite consensus disorder prediction 61 90 - -
Pumo5g03043 449 Pfam RING-variant domain 236 283 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03043 Pumo-Chr5 78459733 78464723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03043 151 290 C3H Transcription Factor Family AT2G37950 28.671 6.01e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03043 - - gmx:100789854 789.26