Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03039 ATGTTTAATGTTATCGGTTTCTCGTTGTTGACGATGGATTCGGTGGCGTACAGGGGATTGCTCTACACATTCTTCATACTCAATTTCGTTTTGGTCTGTCAACTCATTCTCCTTCAACCTCTCGTTTCTGCTTCCGATGGAAAACCTGAAAATGCTGCTGAGTTGTTTGAGCGGGCATCACAGAGCATAAAAGTGAAACATTATACTGAGGCACTTGATGATCTAAATGCTGCGATAGAAGCAGACCCAACCCTTTCGAAAGCATACCTTTTCAGAGCCTCAGTTCTTCGTCAGATATGCAGATATGAGCAATCTGAGAGGAGCTACAAAAAGTTTCTGGAGTTAAAACCTGGGGATTCAGCTGCAGAAAAGGAGCTCTCTCAACTATTGCAGGCTCAAAGTGCCCTAGAAACAGCTCAGTCCCTCTATGATTTGGGAAACTTCTCAAAATCTTTGGAATATATTGATAAAGTTGTTCTTGTTTTTTCTCCAGCTTGCAATAAGGCTAAGCTTCTTAAAGTGAAGGTGCTAATAGCTGATAAAGAGTATGAGAGTGCTATAGCTGAGTCTGGGTTTCTTCTCAAGGAAGATGAAAATAATTTAGAGGCATTGTTGTTACGTGGTCGTGCATGTTACTATTTAGCTGATCATGATGTTGCCACGAGGCATTTTCAGAAGGGTCTCCGCCTAGATCCAGAGCATAGTGAACTGAAAAAGGCATATTTTGGATTGAAAAATCTACTCAAAAAGAGTAAAAGTGCTGAAGATAATGCAAGCAAAGGTAAACTACGCGTGTCAGTGGAGGAATTCAAAGCTGCACTTGCTGTCGACCCTAACCATCTTGCACACAATGTACATCTTCATCTTGGCTTATGTAAAGTGCTAGTCAAGCTTGGCAGAGGAAAAGATGCCTTGGACAGTTGTAATGAAGCTCTTAAAATCAATGAGGAGCTTGTGGAAGCTCTTGTTCAGAGAGGAGAAGCTAAACTCTTAACAGAGGATTGGGAGGGAGCTGTGGAGGATCTGAGATCAGCTGCTCAAAAATCTCCTCAGGATTTGAATATCCGTGAAGCAGTAATGAGGGCTGAGAAAGCTTTAAAGATAAGCAAACGCAAGGACTACTACAAAATTTTGGGAATTTCAAAAACAGCTTCTGCTGCTGATATAAAACGTGCCTACAAGAAACTTGCCTTACAATGGCATCCAGATAAGAATGTCGACAAGAGGGAAGAAGCAGAGGCTAAATTCCGAGAAATCGCTGCTGCATACGAGGTTCTCAGCGATGAAGACAAGCGCGTAAGATATGACAGAGGGGAGGACCTTGAAGAGTCGGGAATGGGTGGCGGCGGCGGTGGTTTCAACCCTTTTGGTGGTGGTGGGGGGTTTACATATACTTTTGAGGGTGGCTTCCCTGGTGGTGACTTTGGTGGAGGCTTTCCTGGTGGTGGATTTGGAGGGGGCTTTCCTGGCGGGTATGAGTTCCATTTTTGA 1491 0.4366 MFNVIGFSLLTMDSVAYRGLLYTFFILNFVLVCQLILLQPLVSASDGKPENAAELFERASQSIKVKHYTEALDDLNAAIEADPTLSKAYLFRASVLRQICRYEQSERSYKKFLELKPGDSAAEKELSQLLQAQSALETAQSLYDLGNFSKSLEYIDKVVLVFSPACNKAKLLKVKVLIADKEYESAIAESGFLLKEDENNLEALLLRGRACYYLADHDVATRHFQKGLRLDPEHSELKKAYFGLKNLLKKSKSAEDNASKGKLRVSVEEFKAALAVDPNHLAHNVHLHLGLCKVLVKLGRGKDALDSCNEALKINEELVEALVQRGEAKLLTEDWEGAVEDLRSAAQKSPQDLNIREAVMRAEKALKISKRKDYYKILGISKTASAADIKRAYKKLALQWHPDKNVDKREEAEAKFREIAAAYEVLSDEDKRVRYDRGEDLEESGMGGGGGGFNPFGGGGGFTYTFEGGFPGGDFGGGFPGGGFGGGFPGGYEFHF 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03039 496 ProSiteProfiles TPR repeat profile. 201 234 IPR019734 GO:0005515
Pumo5g03039 496 SMART dnaj_3 372 431 IPR001623 -
Pumo5g03039 496 PRINTS DnaJ domain signature 393 408 IPR001623 -
Pumo5g03039 496 PRINTS DnaJ domain signature 375 393 IPR001623 -
Pumo5g03039 496 PRINTS DnaJ domain signature 431 450 IPR001623 -
Pumo5g03039 496 PRINTS DnaJ domain signature 411 431 IPR001623 -
Pumo5g03039 496 SUPERFAMILY Chaperone J-domain 367 477 IPR036869 -
Pumo5g03039 496 ProSitePatterns Nt-dnaJ domain signature. 416 435 IPR018253 -
Pumo5g03039 496 CDD DnaJ 373 428 IPR001623 -
Pumo5g03039 496 Pfam Tetratricopeptide repeat 295 352 - -
Pumo5g03039 496 Pfam DnaJ domain 373 436 IPR001623 -
Pumo5g03039 496 Gene3D DnaJ domain 371 479 IPR036869 -
Pumo5g03039 496 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 23 495 IPR044620 -
Pumo5g03039 496 ProSiteProfiles dnaJ domain profile. 373 439 IPR001623 -
Pumo5g03039 496 Coils Coil 409 429 - -
Pumo5g03039 496 FunFam DnaJ subfamily C member 7 371 478 - -
Pumo5g03039 496 ProSiteProfiles TPR repeat profile. 86 119 IPR019734 GO:0005515
Pumo5g03039 496 SUPERFAMILY TPR-like 48 367 IPR011990 GO:0005515
Pumo5g03039 496 Gene3D Tetratricopeptide repeat domain 41 370 IPR011990 GO:0005515
Pumo5g03039 496 SMART tpr_5 319 352 IPR019734 GO:0005515
Pumo5g03039 496 SMART tpr_5 52 85 IPR019734 GO:0005515
Pumo5g03039 496 SMART tpr_5 132 165 IPR019734 GO:0005515
Pumo5g03039 496 SMART tpr_5 285 318 IPR019734 GO:0005515
Pumo5g03039 496 SMART tpr_5 86 119 IPR019734 GO:0005515
Pumo5g03039 496 SMART tpr_5 201 234 IPR019734 GO:0005515
Pumo5g03039 496 FunFam DnaJ domain containing protein 39 370 - -
Pumo5g03039 496 Pfam Tetratricopeptide repeat 87 118 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03039 Pumo-Chr5 78439075 78445229 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03039 369 436 C2H2 Transcription Factor Family AT1G74250 45.833 1.00e-10 62.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03039 5 78439075 78445229 Pumo5g03039 5 78439075 78445229 ECH