Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03038 ATGCAAATGATACCCGGAGACCCCTTTTCACTATCCACTTCCCTCCCAGTGCTTCCCAATGAACAAAACACAAACAAAAACCCTAACCCTAATCCTCCACCCCCCACCAAAAAGAAGAGAAATCTACCAGGAACACCAGATCCAGATGCGGAGGTTATTGCTCTTTCGCCAAAGACTCTCATGGCCACGAACCGTTTCATCTGTGAAATATGCAACAAAGGATTTCAGAGGGACCAGAACCTTCAGCTTCATAGAAGGGGTCACAACCTTCCATGGAAGCTACGACAGAGATCAAACAAAGAGGTTCGCAAGAAGGTATATATCTGTCCAGAGAAAACCTGTGTCCACCACGATGCGGCAAGGGCTCTCGGCGACCTCACCGGAATAAAGAAGCATTACAGCAGAAAACACGGTGAGAAGAAGTGGAAGTGTGAAAAGTGTTCCAAAAAATACGCAGTTCAATCTGATTGGAAAGCTCACACCAAAACCTGTGGCACCAGAGAATATAAGTGCGACTGTGGCACCCTCTTCTCCAGGAAGGACAGTTTTATTACTCACAGGGCCTTCTGCGATGCCTTAGCCGAAGAGAGTTCGAGACTCACCTCAGTTGCTTCAACTAGCCTAAATTTTAAGAGCGAAGATGCGACTTTGATGAACACACAGGCTAGTTTGTCGTCACGTGGATTAATCACTGGTCAGGGAATGCAAAATGTTCCACAATTTGGTCCACATGGATTTCGTTTAATGGGGATGGGTGCAGACCAGCAAAGACCAAATTTGTCACTATGGTTGAACCAGGGAAATCACCACAACATTAACAATCCACTTGATGTGGCATCATCAAGTTCTTCTGGTTTGCCTGAGGTTGTGCACATGGCACAAGCTAATAACAATGCCTTAATTGGTGGTTCTTCTTCAATGTTCTCCAATTTTGGAATGCCTGCTTCTTCCAATTCAAACCTTTCCCTAATTGGGAAAAAGGGAGAAGGTGGAGCTTCAGATATGGCATCAATTTATTCTGAGAGTCAAAACAAGAATTCAAACTCAGCTTCCCCAATGTCAGCCACTGCCCTTTTGCAGAAAGCAGCACAGATGGGTTCCACCAGAAGCACCAACCCTTCAATTTTCAGTGGCAGTTTTGGAGTAATGAGCTCATCCTCCACCCAAAGTACTAATCTCAATAATAGCAATGCAAACCAAAGCTGTGACCAACTTAACCAAGCCCTTCAGAACATGAACCAACATGAGAATTTTAATGCAACAAGCAGTAGTGCAACTGTGTTGGGTAGCTCTACTAATAACTTCAGCTCATTGACTCATTCATCAAACGGTTTTGATCAGTTTCTGATGCAAAACAATGTGGAACCAACTCAGTTGAAGCTCCACCCTGGCTCAAACTCAGTGGAACATAACTTGACAAGGGATTTTCTTGGCATGAGTGGAAATGGAGGTGGACATCCATTTCTACCCCAAGAGCTGGCAAAGTTTGCTTCCTTAGGCTCATCAATGGGTTTGAATCAGTTCACTGCAGGCCATCAATGA 1542 0.4462 MQMIPGDPFSLSTSLPVLPNEQNTNKNPNPNPPPPTKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDAARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESSRLTSVASTSLNFKSEDATLMNTQASLSSRGLITGQGMQNVPQFGPHGFRLMGMGADQQRPNLSLWLNQGNHHNINNPLDVASSSSSGLPEVVHMAQANNNALIGGSSSMFSNFGMPASSNSNLSLIGKKGEGGASDMASIYSESQNKNSNSASPMSATALLQKAAQMGSTRSTNPSIFSGSFGVMSSSSTQSTNLNNSNANQSCDQLNQALQNMNQHENFNATSSSATVLGSSTNNFSSLTHSSNGFDQFLMQNNVEPTQLKLHPGSNSVEHNLTRDFLGMSGNGGGHPFLPQELAKFASLGSSMGLNQFTAGHQ 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03038 513 Gene3D Classic Zinc Finger 128 203 - -
Pumo5g03038 513 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Pumo5g03038 513 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Pumo5g03038 513 MobiDBLite consensus disorder prediction 1 49 - -
Pumo5g03038 513 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 486 IPR031140 -
Pumo5g03038 513 Coils Coil 395 415 - -
Pumo5g03038 513 Gene3D Classic Zinc Finger 44 121 - -
Pumo5g03038 513 FunFam protein indeterminate-domain 12-like 45 113 - -
Pumo5g03038 513 SMART c2h2final6 142 162 IPR013087 -
Pumo5g03038 513 SMART c2h2final6 66 88 IPR013087 -
Pumo5g03038 513 SMART c2h2final6 107 137 IPR013087 -
Pumo5g03038 513 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
Pumo5g03038 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Pumo5g03038 513 MobiDBLite consensus disorder prediction 26 41 - -
Pumo5g03038 513 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Pumo5g03038 513 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03038 Pumo-Chr5 78428786 78431609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03038 1 500 IDZ Gene Family AT5G03150 47.207 1.01e-137 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo5g03038 zf-C2H2_jaz 7.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03038 K25870 - gmx:100812495 840.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03038 5 78428786 78431609 Pumo5g03038 5 78428786 78431609 ECH
Pumo5g03038 5 78428786 78431609 Pumo3g03295 3 60613281 60616245 PCT