Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03037 ATGTGCCCTTCAGCTGCAAGAAAATGCTACATAGGAAAGTTGGATCAGACTGGCTTTCGCTGCAAGGTACAAATTGATCAGCAGGTTGTTCCTCCGGAGGCATCTACCTTCATGTTCATGGACAAAGATGCTAATTCAGAAATCCAACTCCCTCCTGGATTTAGATTCCACCCTTCTGATGAGGAGCTAATTGTTCACTATCTGAGAAACAAAGTGACATCATCACCCCTTCCTGCTTCATTCATAACAGAAATAGATCTTTACAAGTATAATCCATGGGAGCTCCCAAGCAAAGCTTTGTTTGGGGAGGATGAATGGTATTTCTTTACTCCTAGGGACAGGAAGTATCCCAATGGAGTGAGGCCTAATAGAGCAGCTGCTTCTGGTTACTGGAAGGCTACTGGGACTGACAAACCCATTTTCACTTCCTGTGGGATGAAGAGCATTGGAGTGAAGAAGGCCCTTGTGTTCTACAAGGGTCGTCCACCAAAGGGATCTAAAACCGACTGGATCATGCATGAGTATAGGTTGCATGATTCCATGATCTCCAATTCAAGGAAAAGAGGGTCCATGAGACTGGATGAGTGGGTGCTGTGCCGGGTTCGACAAAAGACTAGCAGCCCAAGAAGCATTTGGGAAGACTCAAATGAACCTATTTATGAACCAACAAGCCACTTTCAACAAATGAGTGAGAACTCAAATCCTGAACCAGTCAAAAACTCTGTGCATAGTGAATATCCAATGTTACCTTATATTCTGGCTTCTAACTGTGCTCTGCCTAATTCTATTGGCATGGCCTCAAGCTCGGGCTTTGGCTGTAGTGATGATGTAAAAGCATATGCTTCATTGCATGATGGCAACTTAAATAATATAATAATAGGAGCGCAGTCTATGGCACCTGTAGCTGAGGACTTGTTTAATCCTCTGAAGAGAAAAAACATTGAAGAGAATGAGTTGGACTTTGCTCCCCTCAATAAAATACTTAGCGAAGAAGTTGATGTTGGGAAACAAAGACATGAGAAAGATGTAAACAAAGGCTACAATTTCAATACCTTTGACCAGTGGACTTCCATCATACAACCCCAAGAGCTTAATAGCTTGGTCTTTACGAAATTTGCATGA 1122 0.4269 MCPSAARKCYIGKLDQTGFRCKVQIDQQVVPPEASTFMFMDKDANSEIQLPPGFRFHPSDEELIVHYLRNKVTSSPLPASFITEIDLYKYNPWELPSKALFGEDEWYFFTPRDRKYPNGVRPNRAAASGYWKATGTDKPIFTSCGMKSIGVKKALVFYKGRPPKGSKTDWIMHEYRLHDSMISNSRKRGSMRLDEWVLCRVRQKTSSPRSIWEDSNEPIYEPTSHFQQMSENSNPEPVKNSVHSEYPMLPYILASNCALPNSIGMASSSGFGCSDDVKAYASLHDGNLNNIIIGAQSMAPVAEDLFNPLKRKNIEENELDFAPLNKILSEEVDVGKQRHEKDVNKGYNFNTFDQWTSIIQPQELNSLVFTKFA 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03037 373 FunFam NAC transcription factor 59 208 - -
Pumo5g03037 373 SUPERFAMILY NAC domain 38 204 IPR036093 GO:0003677|GO:0006355
Pumo5g03037 373 Gene3D NAC domain 59 208 IPR036093 GO:0003677|GO:0006355
Pumo5g03037 373 Pfam No apical meristem (NAM) protein 51 177 IPR003441 GO:0003677|GO:0006355
Pumo5g03037 373 ProSiteProfiles NAC domain profile. 50 204 IPR003441 GO:0003677|GO:0006355
Pumo5g03037 373 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 49 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03037 Pumo-Chr5 78415017 78417782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03037 43 211 NAC Transcription Factor Family AT1G69490 66.864 2.75e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo5g03037 NAM 7.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03037 - - gmx:100788799 637.491