Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03034 ATGGGGCATAGGCACTTATATAACACATCTCCATTGTTCGAGGGTGAGCCTGATCAGAATTGGAATCATATGCATACTGATCAACACTATGTGCACCTTGGTAGGACTAGCACTTCAGAGAATGGTTCTTTTATTTATCCTGCAGAAAATATGTCCATAGATAGCATTTCTTTCCCCTCTCATTGGAATTCTTCCACAAGGTCAAATGGATATGCATCCTCAAGTCACAACATTGATATTCCTCCTCACCAGTCAGATGCATCAGGCACTTCTAATGATCATTTTGTGCATTCGTCTAGTGCTGGACCATGCTTTTCAGTGTCGGAAAATTATGTACACCAGCCTTCTTCTTCTTCCAATTATGACAGACAACCATTTCATGTTGATGGTGGTTTTATTGATCTTACAATGGGAAGTGGACAAGGGCATCACAAGCGTAAAAGCCCTGGAATTCCTTCAGTCTATGAGAGAGGCAGTACTAGTAGATACTTTAATGCTGGGAGTTCAACTGATCTTCCTATATCTTCAGAAATATGGCAGGAGAAGCCAAATATTGATTCTCAATATATGCCCTGGGATCATTGTACTATGACACCCGCATTCAGAGGTACTGGCCTTTCAATAAAGGGTGAGGGTTCTTTGCGGAATGTGAGGAGCCGTTCTACACTTGATTTGGATTCCAACCTGGCTAGGACCCATTTATCAAGTAATCATTCACACAATTCCTACCCTACTGTCCCACCAGTTGACCATTCTAGCATGGTGGATCTTTCTGGTCAGACCTCTGCTACATTGACAAGGGATTGGAGCCAAATGAACATATCTCCAGCCAATGGAAGGGTGTTATTATCGGATACAAGTGCTTTTGGTCTTGAGACAAGTCACTTCCTTGTTGGAAGTGGTGCTACTGCTAGCAATGCTTCTGTAGATGTTGGGGGCTTCCATCATGAATTTGGTACAAGCAGAAATCCTACCGCTCCTCAAAGTTATCATAATAATCAAACTCAGACTGCTAGGGGAATTCGAAGCAACTATTCTCAGAGATCCACTCCAACTTTTAGGGCTTCTTCAAGCTTGCGCTTGGGACATGTGACATCTTTGGATGATGGATTGCCTATGGTAGCTGAAAGTTACCCTTCTAGACATCCAAGGCCATTGAGCACCATTGGCTGGCGGAATGGTGATAGAAATGGGAGGTCAAGAATTTCTAGTGAAAGATATCGATCATTGACTGAGGAGAGTGGTCTCCATGATCGATTTTCCTCTGAGGGTTTCATGGTTGTTGAGCGTGCATCAGTACATGGTTCCAGGAATATGCTTGATCAGCACCGAGACATGAGGATGGACATAGATAACATGAGCTATGAGGAACTACTTGCACTTGGTGAGAGGATTGGCTATGTGAACACAGGAATCTCTGAGGATTTGCTTTCCAAATGTTTGACGGAAACAATATATTGTTCATCTGAGCAAAGTCAAGACGAAGGAAACTGCGTAATATGTCTGGAAGAGTACAAGAACATGGACGATGTTGGAACACTTAAAACTTGTGGACATGACTACCATGTGAGCTGCATTAAAAAGTGGTTATCTATGAAGAAATTATGTCCTATCTGCAAAGTATCTGCTTTGCCTGAGGATACGAAGGATAAATAA 1656 0.4245 MGHRHLYNTSPLFEGEPDQNWNHMHTDQHYVHLGRTSTSENGSFIYPAENMSIDSISFPSHWNSSTRSNGYASSSHNIDIPPHQSDASGTSNDHFVHSSSAGPCFSVSENYVHQPSSSSNYDRQPFHVDGGFIDLTMGSGQGHHKRKSPGIPSVYERGSTSRYFNAGSSTDLPISSEIWQEKPNIDSQYMPWDHCTMTPAFRGTGLSIKGEGSLRNVRSRSTLDLDSNLARTHLSSNHSHNSYPTVPPVDHSSMVDLSGQTSATLTRDWSQMNISPANGRVLLSDTSAFGLETSHFLVGSGATASNASVDVGGFHHEFGTSRNPTAPQSYHNNQTQTARGIRSNYSQRSTPTFRASSSLRLGHVTSLDDGLPMVAESYPSRHPRPLSTIGWRNGDRNGRSRISSERYRSLTEESGLHDRFSSEGFMVVERASVHGSRNMLDQHRDMRMDIDNMSYEELLALGERIGYVNTGISEDLLSKCLTETIYCSSEQSQDEGNCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKVSALPEDTKDK 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03034 551 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 80 544 IPR045191 GO:0061630
Pumo5g03034 551 SMART ring_2 498 539 IPR001841 -
Pumo5g03034 551 MobiDBLite consensus disorder prediction 376 400 - -
Pumo5g03034 551 SUPERFAMILY RING/U-box 488 543 - -
Pumo5g03034 551 MobiDBLite consensus disorder prediction 64 95 - -
Pumo5g03034 551 CDD RING-H2_RNF24-like 498 543 - -
Pumo5g03034 551 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 463 544 - -
Pumo5g03034 551 ProSiteProfiles Zinc finger RING-type profile. 498 540 IPR001841 -
Pumo5g03034 551 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 465 544 IPR013083 -
Pumo5g03034 551 Pfam Ring finger domain 497 540 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03034 Pumo-Chr5 78388629 78396351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03034 1 550 C3H Transcription Factor Family AT2G37150 44.265 4.21e-124 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03034 - - gmx:100803627 1068.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03034 5 78388629 78396351 Pumo5g03034 5 78388629 78396351 ECH
Pumo5g03034 5 78388629 78396351 Pumo3g03297 3 60671812 60680213 PCT