Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03027 ATGGCCAACGACTCGTCGTTTTTGTTCGCCGGCATTCGTTTCGATAGAAAAAAGTTCGGCGCCGATATTGCAAGGTTCCAGAAAAAAGATAGTGATACCGATTCGGCGAAGATTTTGAGCGCCGCCGAAGACGAAAGCGAGAAAACGAGAGAACCAGTGGAAGAGAAAGCAGCGTCAACGAAGAAGAGGAAGCGCAAGGGAACCTCTTCCGAAACGGTAGAAGGATTCAACGTGTTCAGAAATTCATCGTCTGTGGCGCAGTCGAATGATGAAGTCCAAGCTAATGAGGAGTCCGTTGAGCTGAATAAGAAGAAAAAGGAGCAAAATAAGCAACTCGAGCGGGACGCAATATTCAGAAAGCAGCACAACATTCATGTCTCTGGTTATAACGTGCCGTCTCCTCTTCCAAGCTTTGATGAGTTGAAATCAAGATATAACTGTCCTTCATATTTGTTGCGCAATCTGAAGGAACTTGGATTCAGAGAACCAACACCTATCCAAAGGCAGGCTATTCCAGTACTTCTACAAGGTCGTGAATGCTTTGCTTGTGCACCAACGGGCTCTGGGAAAACCCTTGCGTTTGTGTGTCCAATGCTTATGAAGCTTAAGGATCCAGAAAAAGGTGGCATTCGAGCTGTTATCCTTTGTCATACCCGTGAATTATCTGCTCAAACATATCGAGAGTGCAAAAAGCTTGCTAAAAGAAAAAAATTTCGTATCAAGTTGATGACTAAAAATCTTTTAAGAAATGCTGATTTTTCAAAATTTCCATGTGACGTACTAATATCCACACCACTTCGATTACGCTTGGCTATCAAGAGGAAGAAGATTGATCTCAGCAGAGTTGAGTATCTTGTCCTGGATGAATCAGATAAGCTATTTGAGCCTGAATTATTCAAGCAAATTGATTCTGTTATCAAGGCATGCTCAAATCCCTCAATAATACGCTCACTGTTCAGTGCTACTTTACCTGATTTTGTTGAAGATCGAGCTCGAGAACTTATGCATGATGCTGTTCGTGTAATTGTTGGCAGAAAGAATATGGCTTCTGAAACAATAAAGCAAAAATTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTCTAGCAATTCGTCAAAGCTTTGCCGAGAGTTTAAATCCTCCAGTATTGGTCTTTCTCCAAAGCAAGGAGCGAGCCAAGGAGCTGTACAGTGAACTTGCATTTGACAACATTAGAGTTGATGTCATCCATTCTGATTTGTCTCAAGCTGAGCGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACATGGGTTTTGATTGCTACTGATGTAGTTGCCCGGGGCATGGATTTCAAAGGTGTGAACTGTGTGATCAATTATGATTTCCCTGATTCTGCTGCTGCATATGTCCACAGAATTGGTCGTTCTGGCAGAGCTGGGAGGACTGGAGAAGCAATTACTTTTTACACAGAAGATGACATTCCATTCCTGCGGAATGTTGCTAATCTTATGGCAGCGTCGGGCTGTGAGGTTCCATCCTGGCTCATGGAGTTGCGCAAAAAGAAGTGGAAGAAGCACCGGCCTAAAAGAGATTCAATCTCAACAAAACCAGACCTATAA 1602 0.4263 MANDSSFLFAGIRFDRKKFGADIARFQKKDSDTDSAKILSAAEDESEKTREPVEEKAASTKKRKRKGTSSETVEGFNVFRNSSSVAQSNDEVQANEESVELNKKKKEQNKQLERDAIFRKQHNIHVSGYNVPSPLPSFDELKSRYNCPSYLLRNLKELGFREPTPIQRQAIPVLLQGRECFACAPTGSGKTLAFVCPMLMKLKDPEKGGIRAVILCHTRELSAQTYRECKKLAKRKKFRIKLMTKNLLRNADFSKFPCDVLISTPLRLRLAIKRKKIDLSRVEYLVLDESDKLFEPELFKQIDSVIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKERAKELYSELAFDNIRVDVIHSDLSQAERENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSAAAYVHRIGRSGRAGRTGEAITFYTEDDIPFLRNVANLMAASGCEVPSWLMELRKKKWKKHRPKRDSISTKPDL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03027 533 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 49 520 - -
Pumo5g03027 533 Gene3D - 79 340 IPR027417 -
Pumo5g03027 533 SMART ultradead3 159 356 IPR014001 -
Pumo5g03027 533 CDD SF2_C_DEAD 353 483 - -
Pumo5g03027 533 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 171 341 IPR014001 -
Pumo5g03027 533 CDD DEADc_DDX52 151 344 IPR044764 GO:0003724|GO:0005524|GO:0030490
Pumo5g03027 533 MobiDBLite consensus disorder prediction 71 95 - -
Pumo5g03027 533 MobiDBLite consensus disorder prediction 28 70 - -
Pumo5g03027 533 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 130 420 IPR014013 GO:0005524
Pumo5g03027 533 SMART helicmild6 393 474 IPR001650 -
Pumo5g03027 533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 486 IPR027417 -
Pumo5g03027 533 Coils Coil 89 115 - -
Pumo5g03027 533 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 140 168 IPR014014 GO:0003724
Pumo5g03027 533 Pfam DEAD/DEAH box helicase 164 328 IPR011545 GO:0003676|GO:0005524
Pumo5g03027 533 Pfam Helicase conserved C-terminal domain 371 474 IPR001650 -
Pumo5g03027 533 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 352 513 IPR001650 -
Pumo5g03027 533 MobiDBLite consensus disorder prediction 28 108 - -
Pumo5g03027 533 Gene3D - 341 518 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03027 Pumo-Chr5 78319937 78324949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03027 134 512 Eukaryotic Initiation Factors Gene Family AT3G19760 32.021 8.59e-57 193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03027 5 78319937 78324949 Pumo5g03027 5 78319937 78324949 ECH