Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03024 ATGGGGAGGAAGGGAAATTGGTTTTCTAGCGTGAAGAAAGCTCTCAGCCCAGACTCAAAGGAGAAGAAAGATCAGAAATCAAGTAAATCTAAGAAGAAATGGTTTGGGAAGCAAAAATTGGAGACTTCAGTCTCATACTCAGAAGCTGATAAAGCACCACCACCACCACCTATTCCTCCACCAGAAGAGATTAAATTAACTGATATTGAAAATGAAATCCGTCATGATCACGATCATGTTGTTGAAGTTGCAACTGCCATTGATGCCGAGGAACCTGTTCCTTCTGTTCAGATAGAGCCTGTTAGGGTTGAAGCTGCCCCAATTGCTCGTTTTGCCGGTAAACAAAATGATGAAGTGGCAGCAATCAAAATTCAAACAGCTTTTCGGGGATACTTGGCAAGAAGAGCATTGCGGGCTTTAAGGGGGCTGGTCAGGTTGAAATTATTGATGGAAGGGCCAGTTGTAAAACGCCAAGCCACAAGTACCCTCCGCTCTATGCAGACATTATCTCGCTTGCAGTCTCAGATTCGTTCCAGGAGGATCAGAATGTTAGAGGAGAATCAGGCTCTGCAGAGGCAGCTCTTACAGAAGCATGCAAGAGAGCTCGAGAGCTTGCGGATGGGAGAGGAATGGGATGACAGCCTACAATCAAAAGAACAAATCGAAGCCAAGTTACTAAGCAAATATGAGGCTGCTATGAGAAGAGAAAGAGCACTGGCTTATGCATTCACTCATCAGCAAAACTGGAAGAACTCATCTAGATCTGTAAATCCAATGTTCATGGATCCAACAAATCCGACCTGGGGTTGGAGCTGGTTGGAACGATGGATGGCAGCCCGACCTTGGGAGAGCCGTAGCCATACGGATAAAGAGTTGAATGACCACTCATCCGTAAGAAGCTCAAGCCGCAGCATTACTGGTGGAGAAATCAGCAAGTCATTTGCTCGTTTCCAGCTCAATTCTGAAAAGCACTCTCCAACAGCCAGCCAGAATCCTGGCTCACCTAGCTTTCAGTCCACTCCTTCCAAGCCAGCTTCATCATCTGCTAAGAAACCAAAGAAGGTAAGCCCAAGCCCAAGGGGCAGCTGGGTTACGGATGAAGACTCCAAAAGCTTGGTCAGTGTACAGTCAGAACGGTTCCGGAGGCACTCCATTACCGGTTCATCGGTGAGAGATGACGAAAGCCTTGCTAGCTCTCCATCAGTTCCAAGCTACATGGTGCCAACTCAATCTGCAAAAGCCAAGTCCAGGACACAAAGTCCATTAGCCCCAGAAAATGGAAAAGCAGAGAAAGGATCCTTTGGGAGTGCAAAGAAGCGGCTTTCTTTCCCAGCTTCACCGGCCAGGCCAAGGCGCCATTCAGGTCCACCAAAGGTAGAAAACAGCATCTTAAATGCAGAGGTATCTGTGGACAAAGGCGTGGACAGTTGA 1431 0.4731 MGRKGNWFSSVKKALSPDSKEKKDQKSSKSKKKWFGKQKLETSVSYSEADKAPPPPPIPPPEEIKLTDIENEIRHDHDHVVEVATAIDAEEPVPSVQIEPVRVEAAPIARFAGKQNDEVAAIKIQTAFRGYLARRALRALRGLVRLKLLMEGPVVKRQATSTLRSMQTLSRLQSQIRSRRIRMLEENQALQRQLLQKHARELESLRMGEEWDDSLQSKEQIEAKLLSKYEAAMRRERALAYAFTHQQNWKNSSRSVNPMFMDPTNPTWGWSWLERWMAARPWESRSHTDKELNDHSSVRSSSRSITGGEISKSFARFQLNSEKHSPTASQNPGSPSFQSTPSKPASSSAKKPKKVSPSPRGSWVTDEDSKSLVSVQSERFRRHSITGSSVRDDESLASSPSVPSYMVPTQSAKAKSRTQSPLAPENGKAEKGSFGSAKKRLSFPASPARPRRHSGPPKVENSILNAEVSVDKGVDS 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03024 476 Gene3D - 78 143 - -
Pumo5g03024 476 ProSiteProfiles IQ motif profile. 117 145 IPR000048 GO:0005515
Pumo5g03024 476 MobiDBLite consensus disorder prediction 1 63 - -
Pumo5g03024 476 Pfam IQ calmodulin-binding motif 120 138 IPR000048 GO:0005515
Pumo5g03024 476 MobiDBLite consensus disorder prediction 390 423 - -
Pumo5g03024 476 MobiDBLite consensus disorder prediction 321 353 - -
Pumo5g03024 476 SMART iq_5 116 138 IPR000048 GO:0005515
Pumo5g03024 476 MobiDBLite consensus disorder prediction 286 305 - -
Pumo5g03024 476 MobiDBLite consensus disorder prediction 321 476 - -
Pumo5g03024 476 PANTHER IQ-DOMAIN 5-RELATED 1 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03024 Pumo-Chr5 78292673 78297354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03024 1 476 IQD Protein Family AT5G03040 53.783 2.23e-153 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03024 - - gmx:100777223 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03024 5 78292673 78297354 Pumo5g03024 5 78292673 78297354 ECH
Pumo5g03024 5 78292673 78297354 Pumo3g03306 3 60773876 60777071 PCT