Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03021 ATGAGTGAGGTTACGTGTATTGACATACAAAGGGTTAGGGTTTTGCACTGCGGCTGCTACTTCGGCTCCATCCGATTTCCTCACACTCTATCTGCGCAGAACCAAACCTCTATCACCATGGGGAAGACACATGGAATGGGAGCTGCCCGCAAGCTGAAGTCTCACCGTAGGAGACAAAGATGGGCTGACAAGTCATACAAAAAGTCTCATCTTGGCAATGAATGGAAGAAGCCTTTTGCTGGTTCATCCCACGCTAAGGGTATTGTTCTTGAAAAGATAGGTATTGAGGCCAAGCAGCCCAACTCTGCCATTCGAAAATGTGCCAGGGTTCAACTCATCAAAAATGGGAAGAAGATTGCCGCATTTGTGCCAAATGATGGTTGCTTAAATTACATTGAAGAGAATGATGAAGTGTTGATAGCTGGATTTGGACGAAAAGGTCACGCCGTGGGTGATATTCCTGGTGTCAGGTTCAAGGTTGTGAAGGTTTCTGGTGTGTCTCTCCTGGCTCTTTTCAAGGAGAAGAAGGAGAAGCCAAGGTCTTAA 546 0.4634 MSEVTCIDIQRVRVLHCGCYFGSIRFPHTLSAQNQTSITMGKTHGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03021 181 SUPERFAMILY Nucleic acid-binding proteins 59 179 IPR012340 -
Pumo5g03021 181 FunFam 40S ribosomal protein S23 64 181 - -
Pumo5g03021 181 ProSitePatterns Ribosomal protein S12 signature. 98 105 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pumo5g03021 181 NCBIfam 30S ribosomal protein S12 45 180 IPR005680 GO:0003735|GO:0006412|GO:0015935
Pumo5g03021 181 Pfam Ribosomal protein S12/S23 70 180 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pumo5g03021 181 Gene3D - 64 181 IPR012340 -
Pumo5g03021 181 CDD Ribosomal_S23 65 178 IPR005680 GO:0003735|GO:0006412|GO:0015935
Pumo5g03021 181 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 38 181 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pumo5g03021 181 MobiDBLite consensus disorder prediction 48 64 - -
Pumo5g03021 181 MobiDBLite consensus disorder prediction 44 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03021 Pumo-Chr5 78259013 78262011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03021 40 181 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 95.070 2.18e-95 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03021 K02973 - gmx:100796694 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03021 5 78259013 78262011 Pumo5g03021 5 78259013 78262011 ECH
Pumo5g03021 5 78259013 78262011 Pumo3g03312 3 60958414 60960299 ECH
Pumo5g03021 5 78259013 78262011 Pumo3g03312 3 60958414 60960299 PCT