Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03019 ATGCACGGAACACCGGAAGAAGAGACGGAACAGAGGATCGGATACGGTTTCGGATCCTTATCCATGGACCCATTCGGGTTAATGGATATACTTGACACTTACTTTCCTCAGCAACTCTTCACCGTCGAAGAAACCAGGCTCATTCTCACTTCTGCTCTTCTCTCCTTCTTCTCTTCACCGCCGGGACAAAATTTCGTTTCTCAGGTGAAAAATGATTATGGAAACTATGTCTTGTCACTTGACTATCAGCAGTTCAAACAGATATGTCATGTTGAGGAATTTAAGGAAATGTTAATGGAGAAACCTAAAATTGCTCTCTTATGCATGAGTGTTGCCGTTCATAAGGTTTTGCTTTCCAAATGGGAGAATGGCCATCTGGAGCTTGGTGCAAAGGTAGCTATTCGTCTTCATAACTGTCCTGGAACTATGATTGCGCTGAAGAACTTAAAAGCAGCTTATATTGACAAGCTTGTCTCAGTTCGTGGTACTGCTGTGAAAGTTAGCACTGTCAGGCCTCTGGTGGTGGAAATGAGTTTTGAATGCAGTAAATGTAAACAAGCAATTACACGTATATTTCCTGATGGAAAATATTCTCCACCATCTACATGCAATCTGAATGGCTGCAAGAGCAAAATCTTTAATCCGTTACGATCTACTGCTCAAACTATTGATTTTCAAAAAATAAGAGTTCAAGAATTGTTAAAACCCGAAGACCATGAAGAAGGACGGGTGCCTCGAACAGTGGAATGTGAGCTTACCCAAGATCTCGTTGATGCATGCATACCTGGAGATGTGGTGACTGTTACTGGAATTATAAGAGGAATTAATACTTACATGGATATTGGAGGAGGGAAGTCAAAGAACAAAAACCAAGGATTTTACTATTTGTACCTTGAAGCTGTATCCATAAAAAATTCAAAGTCACAGTCAGTACCTGAGGATCTTCAAGACTCTAATCCCAAAGCTAGACCAACTGAGCTGTTTGATTTGTTTTCATTTTCTTCAAAGGATTTAGAATTTGTTGCAGAGTTTGCGCAGGAGCATGGTTCAGATTTATTTCGGCAAATCCTTCAATCAATATGCCCGTCCATCTATGGGCATGAGCTTGTTAAAGCTGGGATAACTCTGGCATTATTTGGTGGTGTACGAAAGCATTCTATGGATCAGAATAAGGTTCCTGTGAGGGGAGATATTCATGTCATAATTGTTGGTGATCCTGGTCTAGGTAAGAGCCAGTTGCTACAAGCAGCAGCAGCTGTTTCTCCACGTGGTATCTATGTCTGTGGTAATGCCACAACCAAAGCTGGCCTCACAGTAGCTGTAGTGAAGGATCCTATGACAAGTGACTATGCTTTTGAGGCAGGTGCTATGGTGCTGGCTGACAGTGGATTGTGCTGTATTGATGAGTTTGATAAAATGTCATCTGAGCATCAGGCTTTACTGGAGGCGATGGAGCAGCAGTGTGTCTCTATTGCAAAGGCGGGATTAGTAGCAAGTTTATCATCCAGGACTTCTGTCTTAGCGGCTGCAAACCCCGCTGGTGGTCATTATAACCGAGCAAAAACTGTAAATGAAAATTTGAAAATGAGTGCTGCTCTCCTGTCTCGTTTTGATTTAATTTTCATACTGCTGGATAAACCCGATGAACTTCTGGACAAGCGACTCTCAGAGCACATTATGGCACTTCACGGTGGGAATGGACAACATTCACCGGCATTGAAAAAGCGACGTGGAGATCCATCTGATTCCAGAGCTGCTGTATCACAGAATGCTGAAGGTGTAGATCTGAGCGTTAGATCTGGATCTTTAATTTCAAGGTTGAGACTTGACCCACTAAGAGACAGTGATTTTGTTCCATTACCCGGTCAACTTCTTCGCAAATACATTGCTTATGCAAGGAGTTTTGTCTTTCCTAGGATGACAAAGCCAGCAGCAGAAATCTTGCAAAAGTTTTACCTAAAACTGAGAGATCATAATACTTCAGCTGATGGTACTCCTATCACTGCTAGGCAGCTGGAAAGTCTAGTAAGGCTAGCTGAAGCTCGGGCTCGATTGGACTTGAGAGAAGAGATAACAGCCCAGGATGCAACGGATGTTGTTGAAATCATGAAGGAATCCCTGTATGATAAATATGTTGATGAGCATGGTGTGGTGGATTTCGGTCGAAGTGGTGGGATGAGTCAACAGAAAGAGGCAAAACGCTTTCTAAATGCCCTCAACAAGCAATCGGAACTGGAACAGAAGGATTGCTTTTCAGTATCTGAAATATACAGTCTAGCAGATAGGATTTGCTTGAAAGTTCCTGATGTTGACACTTTCATCGAAAATTTAAACAGTGTTGGTTATCTACTCAAAAAAGGACCAAAGACATACCAGGTTTTATCCTCTTCCTACGCACGAAGCCAACCGTTTAGGACAAGGGGCTAA 2427 0.4232 MHGTPEEETEQRIGYGFGSLSMDPFGLMDILDTYFPQQLFTVEETRLILTSALLSFFSSPPGQNFVSQVKNDYGNYVLSLDYQQFKQICHVEEFKEMLMEKPKIALLCMSVAVHKVLLSKWENGHLELGAKVAIRLHNCPGTMIALKNLKAAYIDKLVSVRGTAVKVSTVRPLVVEMSFECSKCKQAITRIFPDGKYSPPSTCNLNGCKSKIFNPLRSTAQTIDFQKIRVQELLKPEDHEEGRVPRTVECELTQDLVDACIPGDVVTVTGIIRGINTYMDIGGGKSKNKNQGFYYLYLEAVSIKNSKSQSVPEDLQDSNPKARPTELFDLFSFSSKDLEFVAEFAQEHGSDLFRQILQSICPSIYGHELVKAGITLALFGGVRKHSMDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDPMTSDYAFEAGAMVLADSGLCCIDEFDKMSSEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPAGGHYNRAKTVNENLKMSAALLSRFDLIFILLDKPDELLDKRLSEHIMALHGGNGQHSPALKKRRGDPSDSRAAVSQNAEGVDLSVRSGSLISRLRLDPLRDSDFVPLPGQLLRKYIAYARSFVFPRMTKPAAEILQKFYLKLRDHNTSADGTPITARQLESLVRLAEARARLDLREEITAQDATDVVEIMKESLYDKYVDEHGVVDFGRSGGMSQQKEAKRFLNALNKQSELEQKDCFSVSEIYSLADRICLKVPDVDTFIENLNSVGYLLKKGPKTYQVLSSSYARSQPFRTRG 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03019 808 Coils Coil 467 487 - -
Pumo5g03019 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 713 IPR027417 -
Pumo5g03019 808 Gene3D - 146 275 IPR012340 -
Pumo5g03019 808 CDD MCM8 356 706 - -
Pumo5g03019 808 Gene3D - 173 223 - -
Pumo5g03019 808 Pfam MCM AAA-lid domain 624 707 IPR041562 -
Pumo5g03019 808 SUPERFAMILY Nucleic acid-binding proteins 73 276 IPR012340 -
Pumo5g03019 808 FunFam DNA helicase MCM8 isoform X1 173 224 - -
Pumo5g03019 808 Pfam MCM P-loop domain 349 563 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo5g03019 808 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 45 744 IPR031327 GO:0003677|GO:0005524|GO:0032508
Pumo5g03019 808 Gene3D - 330 717 IPR027417 -
Pumo5g03019 808 PRINTS Mini-chromosome maintenance (MCM) protein family signature 482 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo5g03019 808 PRINTS Mini-chromosome maintenance (MCM) protein family signature 395 410 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo5g03019 808 PRINTS Mini-chromosome maintenance (MCM) protein family signature 506 518 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo5g03019 808 PRINTS Mini-chromosome maintenance (MCM) protein family signature 533 541 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo5g03019 808 PRINTS Mini-chromosome maintenance (MCM) protein family signature 455 469 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo5g03019 808 CDD MCM8_WHD 729 794 - -
Pumo5g03019 808 SMART mcm 142 708 IPR031327 GO:0003677|GO:0005524|GO:0032508
Pumo5g03019 808 SMART AAA_5 396 548 IPR003593 GO:0016887
Pumo5g03019 808 MobiDBLite consensus disorder prediction 566 590 - -
Pumo5g03019 808 Pfam MCM OB domain 146 274 IPR033762 -
Pumo5g03019 808 ProSiteProfiles MCM family domain profile. 352 559 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03019 Pumo-Chr5 78210055 78218930 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03019 15 794 Core DNA Replication Machinery Family AT3G09660 71.266 0.0 1160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03019 K10737 - gmx:100784549 1454.11