Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03018 ATGGCCGACGGTCCGGCGAGCCCAGGCGGCGGCAGCCACGAGAGCGGCGACCACAGCCCTCGCTCTAACGTGCGCGAGCAGGACAGGTACCTCCCGATCGCTAACATAAGCCGCATCATGAAGAAGGCGCTCCCTGCCAACGGTAAAATCGCAAAGGACGCCAAAGAGACCGTTCAGGAATGCGTCTCCGAGTTCATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGTCAGAGGGAGAAAAGAAAGACTATTAACGGCGACGATTTGCTCTGGGCAATGGCCACTCTCGGTTTCGAGGATTATATCGATCCTCTTAAAATTTACCTAACTAGATACAGAGAGATGGAGGTAATTTTGAATCTCTCTTCCAATGTTTGA 381 0.5276 MADGPASPGGGSHESGDHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEVILNLSSNV 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03018 126 FunFam Nuclear transcription factor Y subunit B-3 19 124 - -
Pumo5g03018 126 SUPERFAMILY Histone-fold 27 117 IPR009072 GO:0046982
Pumo5g03018 126 Gene3D Histone, subunit A 16 119 IPR009072 GO:0046982
Pumo5g03018 126 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pumo5g03018 126 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Pumo5g03018 126 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Pumo5g03018 126 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Pumo5g03018 126 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 16 117 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pumo5g03018 126 MobiDBLite consensus disorder prediction 1 28 - -
Pumo5g03018 126 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03018 Pumo-Chr5 78204166 78206132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03018 1 117 CCAAT-HAP3 Transcription Factor Family AT2G37060 85.124 9.70e-70 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pumo5g03018 CBFD_NFYB_HMF 5.4e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03018 K08065 - gmx:100820170 238.424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03018 5 78204166 78206132 Pumo5g03018 5 78204166 78206132 ECH
Pumo5g03018 5 78204166 78206132 Pumo3g03318 3 60999912 61003822 PCT